PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast09G109900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 377aa MW: 41742.6 Da PI: 10.5445 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.0004 | 135 | 156 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C Cg++F+ +++L +H t H Brast09G109900.1.p 135 CRVCGRRFRARDSLLHHFDTiH 156 *****************88877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.385 | 133 | 161 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 135 | 156 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 377 aa Download sequence Send to blast |
MLLPCGSHRS AGPQVPRRRR SPRLPGEISR PMFPPLYNLR RRFLASTPKL LSKPLRYLST 60 TPSLTPASRS PTTPVDVLWD LAASRPPSKL PLYDAAVRLH LAASSFGRLR LSAAFLHPSH 120 RLPAPDPSAD STHLCRVCGR RFRARDSLLH HFDTIHTREH AKRLERIDSS RGDRRVRLAA 180 SLSLKLSKYT KAARELTAAA DPGSPADDLR RAGVRAELSR TPSASLLERA QEVLDQRSVG 240 CLMLVSAHEE LAPLLRLARL KGVRSVVVGG ESGLARWADV GFSWAEVVAG KARKAAPSVS 300 GKWRDRDVLK KLEWRYEEED EEEDVVFEED GDGDGSEKLA GSAKGKPWWK LESDGEQKGK 360 PWWKLESDLE GYRAGG* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast09G109900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024312051.1 | 0.0 | uncharacterized protein LOC100824659 | ||||
Refseq | XP_024312052.1 | 0.0 | uncharacterized protein LOC100824659 | ||||
TrEMBL | I1IYK1 | 0.0 | I1IYK1_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G12650.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12234 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G12240.1 | 4e-42 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast09G109900.1.p |