PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast09G105300.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 637aa MW: 72478.6 Da PI: 7.9709

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast09G105300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	332.7	6.8e-102	254	625	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ++lL++cAe v+s+d a+++L++++ +sp gd qRla+yf+++L+arla+++s+ y++l+ ++ts + + ++a++l+s ++ ++k Brast09G105300.1.p 254 ETLLIRCAESVASNDRWSASEVLEKIKRYSSPMGDGRQRLAHYFAQGLEARLAGTGSQFYHSLTRTRTS---TMKLVQAYHLYSATFCFFK 341 789********************************************************99888888...7888899******** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 +++l N++I++av+g +++Hi+ ++i+ G+QWp L+q La+R++gpp++R+T +++p++g ++e++ee g+rL+++A+++gv+++f++ Brast09G105300.1.p 342 VAFLFSNKTIYKAVAGRKKLHIVHYGINIGVQWPELIQWLADREGGPPEVRMTSISRPQPGfrQSEQIEEAGHRLSNYASKFGVSIKFHA- 431 **************************************************************************************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 ++ + e+++ e++ ++p+E+l+Vn+ +q ++l+des++++ +rd vL+++k+++P v+v++ + +++++ F++rf +al+ ++++fd Brast09G105300.1.p 432 ITAQPEAVRAEDIYIDPDEVLVVNSLFQFKTLMDESLTMDRvsPRDMVLSTIKKMKPSVFVHAITNGSYSAAFFMTRFRHALYNFTSFFDV 522 6889*****************************999888******************************************** PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 le+++pr+++ r +Er +++r+++n++acega+r+er +++++W+ + ++aG++++pl+ +++ k +++ + + ++++e++ +l++g Brast09G105300.1.p 523 LETTIPRNNDRRLQMERDFFARSVMNMIACEGADRVERPQNYREWQTQNHRAGLRQLPLDPDIVLMLKNKVKNEYHKHFMINEDHRWLLQG 613 ***********************************************************************999********* PP GRAS 362 WkdrpLvsvSaW 373 Wk+r L+++S W Brast09G105300.1.p 614 WKGRVLYALSTW 625 ********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.27	227	606	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-99	254	625	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence Send to blast
MAATQEELLG VVESAPLPLS VFLDLPPLTH SYSKQPQDDC SLEYVSRMLM EDDIVDKFTY 60 QYTDHPKLRQ IEQPFAQILS AADTTSFDAD ESSAPDALAS VLLPSKVQDP AFFSNGTLTV 120 EPRNTVFPME SITRMNKMPR TALFKGMEGG KMLLPRDFVT VDSRGCKNKF DVDGVTEAGM 180 GRSSKQIAVV VHTDSEEDEL KKRLDRLILN GYDRYPDEMK EVLITPDKEN KVAQKSSRMR 240 GRRGATQTVL TDLETLLIRC AESVASNDRW SASEVLEKIK RYSSPMGDGR QRLAHYFAQG 300 LEARLAGTGS QFYHSLTRTR TSTMKLVQAY HLYSATFCFF KVAFLFSNKT IYKAVAGRKK 360 LHIVHYGINI GVQWPELIQW LADREGGPPE VRMTSISRPQ PGFRQSEQIE EAGHRLSNYA 420 SKFGVSIKFH AITAQPEAVR AEDIYIDPDE VLVVNSLFQF KTLMDESLTM DRVSPRDMVL 480 STIKKMKPSV FVHAITNGSY SAAFFMTRFR HALYNFTSFF DVLETTIPRN NDRRLQMERD 540 FFARSVMNMI ACEGADRVER PQNYREWQTQ NHRAGLRQLP LDPDIVLMLK NKVKNEYHKH 600 FMINEDHRWL LQGWKGRVLY ALSTWVADDA SSSNVA*

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence Send to blast

MAATQEELLG VVESAPLPLS VFLDLPPLTH SYSKQPQDDC SLEYVSRMLM EDDIVDKFTY  60
QYTDHPKLRQ IEQPFAQILS AADTTSFDAD ESSAPDALAS VLLPSKVQDP AFFSNGTLTV  120
EPRNTVFPME SITRMNKMPR TALFKGMEGG KMLLPRDFVT VDSRGCKNKF DVDGVTEAGM  180
GRSSKQIAVV VHTDSEEDEL KKRLDRLILN GYDRYPDEMK EVLITPDKEN KVAQKSSRMR  240
GRRGATQTVL TDLETLLIRC AESVASNDRW SASEVLEKIK RYSSPMGDGR QRLAHYFAQG  300
LEARLAGTGS QFYHSLTRTR TSTMKLVQAY HLYSATFCFF KVAFLFSNKT IYKAVAGRKK  360
LHIVHYGINI GVQWPELIQW LADREGGPPE VRMTSISRPQ PGFRQSEQIE EAGHRLSNYA  420
SKFGVSIKFH AITAQPEAVR AEDIYIDPDE VLVVNSLFQF KTLMDESLTM DRVSPRDMVL  480
STIKKMKPSV FVHAITNGSY SAAFFMTRFR HALYNFTSFF DVLETTIPRN NDRRLQMERD  540
FFARSVMNMI ACEGADRVER PQNYREWQTQ NHRAGLRQLP LDPDIVLMLK NKVKNEYHKH  600
FMINEDHRWL LQGWKGRVLY ALSTWVADDA SSSNVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-42	257	625	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast09G105300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003581312.3	0.0	scarecrow-like protein 33 isoform X1
TrEMBL	A0A2K2CGS7	0.0	A0A2K2CGS7_BRADI; Uncharacterized protein
STRING	BRADI4G09155.1	0.0	(Brachypodium distachyon)
STRING	BRADI4G09235.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-130	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Brast09G105300.1.p