PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G103500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 585aa    MW: 64603.6 Da    PI: 6.2727
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G103500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.41.8e-24182234155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kprl Wt+eLH++F+ea ++LG  +kA+Pk+i e+m+v+ +t+ +v+SHLQkYR+
  Brast09G103500.1.p 182 KPRLTWTTELHHKFLEAFNRLG--DKAVPKRICEMMNVDYITRRNVASHLQKYRI 234
                         79*******************4..89****************************7 PP
2Response_reg63.97.7e-22131211109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl +d++++ +++l+  l++ +y +v+ + d++ al+ l+e +  +Dl++  + mp+md+++ll++i+ e   +p+iv++a+++ e++ + 
  Brast09G103500.1.p  13 VLAIDEDRVCLKILEATLRRCNY-NVTPVMDAKTALQRLREAKdpFDLVISELHMPDMDAFKLLRRIAVEL-GIPVIVLSAYEDTETVMKG 101
                         7899*******************.***************988889**********************7755.8****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         l+ Ga  +l+Kp++ e++ +
  Brast09G103500.1.p 102 LSSGACCYLAKPVSAEKIKN 121
                         ***************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.0E-3510146No hitNo description
SuperFamilySSF521728.68E-3110135IPR011006CheY-like superfamily
SMARTSM004482.0E-2611123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.01912127IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.5E-1813121IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.88E-2214126No hitNo description
Gene3DG3DSA:1.10.10.607.0E-25179238IPR009057Homeodomain-like
SuperFamilySSF466891.13E-16180238IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-22182234IPR006447Myb domain, plants
PfamPF002493.0E-7184233IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MAAGDELWAG MRVLAIDEDR VCLKILEATL RRCNYNVTPV MDAKTALQRL REAKDPFDLV  60
ISELHMPDMD AFKLLRRIAV ELGIPVIVLS AYEDTETVMK GLSSGACCYL AKPVSAEKIK  120
NIWKHVSRRK VEARNQNNSD NDDVDHNVEA EQGAKAVRKN SLRNRNDRDD SHENNKENAS  180
KKPRLTWTTE LHHKFLEAFN RLGDKAVPKR ICEMMNVDYI TRRNVASHLQ KYRIYLQKQS  240
DPSARASLKW NSYSNMSNLE SFKHYHGHEI RPAYSTFASS SSHNHLAAQP IQLGSTLEDV  300
LPPLSSAISR KTKASAKTLC GILLRTNQGT ASSHLDYSFE NMLDDEVLEP VNQLPVQSIE  360
FVNQSSVLMN APATNVNGAL GDASKFPDLF GNCDNSWQTS APSKFPGLIH KDETSVGPSP  420
ANIPKINHLT SFVGASSRQI PMSQSELQNP MAAFIRNTTP MVGLNQQMAS FNIVSNTSSV  480
EMPNGNFAPG STSSTILPNL HTGNSATLTQ MVNGLSNNYT LPHIEAESSV MSTQKLNGED  540
VGSIPVQEGM ADQEGLDGQL NDNTEFSLDD IFAMDDLYGI KDYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-18179240264ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G103500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311819.10.0two-component response regulator ORR24
TrEMBLA0A0Q3H4010.0A0A0Q3H401_BRADI; Uncharacterized protein
STRINGBRADI5G12160.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2274825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.17e-70response regulator 12