PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast09G092900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 21004.3 Da PI: 5.7181 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.9e-18 | 21 | 71 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr +k +g+Wv+eIr p g ++r++lg+f +ae+Aa a++ a+++l+g Brast09G092900.1.p 21 SQYRGVRKRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 71 78*****999.**********8...325*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.29E-19 | 21 | 81 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-11 | 21 | 71 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-34 | 22 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-29 | 22 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.642 | 22 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-10 | 23 | 34 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.92E-26 | 23 | 81 | No hit | No description |
PRINTS | PR00367 | 6.5E-10 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 193 aa Download sequence Send to blast |
MDESSGKAHQ SPSNASASSQ SQYRGVRKRK WGKWVSEIRQ PGTKTRIWLG SFESAEMAAV 60 AHDVAALRLR GGRGSAQLNF PGSADRLPRP ASSHPEDVRA AAAEAAELVR REPALVARRG 120 EHYEEAGRVP EDQLQQVGRK GSDEELDVDS PRLWAEMAEA MLLDPPAWAT AAGCEMDQAA 180 YCWSQGSLWD AY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-16 | 22 | 81 | 5 | 63 | ATERF1 |
3gcc_A | 9e-16 | 22 | 81 | 5 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast09G092900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581277.1 | 4e-96 | ethylene-responsive transcription factor ERF027 | ||||
TrEMBL | A0A0Q3E8Z8 | 9e-95 | A0A0Q3E8Z8_BRADI; Uncharacterized protein | ||||
STRING | TRIUR3_32168-P1 | 2e-66 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71450.1 | 2e-22 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast09G092900.1.p |