PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G091900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 647aa    MW: 71967.2 Da    PI: 5.8576
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G091900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.6e-24128229199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++ +++aee+      ++++++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   
  Brast09G091900.1.p 128 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmSQNPPC-QELVAKDLHGAEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL-- 215
                         99*****************************7556666.59************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         + +++el+v+v+r+
  Brast09G091900.1.p 216 RGENGELRVGVRRH 229
                         449999******96 PP
2Auxin_resp99.64.2e-33254339183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 
                         a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a k+++svGmRfkm+fe++++ err+sGt+vg+     + +++W +S W+sLk
  Brast09G091900.1.p 254 ASHAISTGTLFSVFYKPRTSRSEFVVSVSKYLEAKKQNMSVGMRFKMKFEGDEALERRFSGTIVGIGStptMPSSQWADSDWKSLK 339
                         789**************************************************************97522266789********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.2E-43119257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-41126243IPR015300DNA-binding pseudobarrel domain
CDDcd100177.36E-22126228No hitNo description
SMARTSM010198.1E-22128230IPR003340B3 DNA binding domain
PfamPF023621.2E-21128229IPR003340B3 DNA binding domain
PROSITE profilePS5086311.702128230IPR003340B3 DNA binding domain
PfamPF065071.0E-31254339IPR010525Auxin response factor
PfamPF023093.7E-5529572IPR033389AUX/IAA domain
PROSITE profilePS5174525.319536628IPR000270PB1 domain
SuperFamilySSF542777.75E-10539614No hitNo description
PfamPF023091.8E-7584627IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MAAAAMEMSN HAPGSAPGIC SDALFRELWH ACAGPLITVP RQGERVYYFP QGHIEQLEAS  60
TNQQLDQYLP MFNLPSKILC SVVNVELRTE ADSDEVYAQI MLQPQDEQSE LTSTGPSQEL  120
ERGTIHSFCK TLTASDTSTH GGFSVLRRHA EECLPQLDMS QNPPCQELVA KDLHGAEWHF  180
RHIFRGQPRR HLLTTGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRHM RQVNNMPSSV  240
ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSRSEFVVS VSKYLEAKKQ NMSVGMRFKM  300
KFEGDEALER RFSGTIVGIG STPTMPSSQW ADSDWKSLKV QWDEPSSILR PDRVSLWELE  360
PLDSANPQTP EPPLRNKRAR PLASPSVVPD LPPNFGLWKS PSEPSQTLSF SEPQRARELF  420
PTSIFSSTNV MFNQFYWPGR ETKDGSYAAS TNKVTAERKH EPTTTGGCRL FGIEISSTVE  480
ETQPVVTVSV GDHDQTAASV DMDSSVLSQP SNVNNSDAPS GSSERALLET QSRQVRSCTK  540
VIMKGMAVGR AVDLARLDGY GDLHRKLEEM FDIQGELCST LKRWQVVYAD DEDDMMLVGD  600
DPWDEFCGMV KRIYIYSYEE AKLLAPKAKT PVIDGATKAE WCELIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.063641357Auxin response factor 1
4ldw_A0.063641357Auxin response factor 1
4ldw_B0.063641357Auxin response factor 1
4ldx_A0.063641357Auxin response factor 1
4ldx_B0.063641357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G091900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2516660.0AK251666.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf119n03, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239942.10.0auxin response factor 9
SwissprotQ0JCZ40.0ARFI_ORYSJ; Auxin response factor 9
TrEMBLI1IY200.0I1IY20_BRADI; Auxin response factor
STRINGBRADI5G10950.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]