PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G083400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 481aa    MW: 50919 Da    PI: 6.7371
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G083400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS264.63.4e-81764722374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         ++lLl+ A a ++gd+++a  +L ++s +as +g dp+qR+aa+f+ ALa+rl+  +++  + +++s+  +++ ++++ a+++f+++sP++
  Brast09G083400.1.p  76 TRLLLSSAAAGEAGDTHAAAVALREVSRHASFRGgDPVQRVAAHFADALASRLLLLSPRAPAPVAASTPLKTRAEQSFLAFTMFYQASPLY 166
                         689****************************9999********************9999999999999998999999************** PP

                GRAS  92 kfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpeg...................ppslRiTgvgspesgskeelee 160
                         +f+h+taNqaIlea+e++   + +H++D+d+s G+QWp+L+q+L++ ++                    + slRiTg+g+    s+++l+ 
  Brast09G083400.1.p 167 QFAHFTANQAILEAFETSctrRSLHVVDLDVSFGFQWPSLIQSLSDAAATsspqssshddsgdcdaepaAVSLRITGFGK----SADALRD 253
                         *****************9998999********************987733345778899999999987666*********....9****** PP

                GRAS 161 tgerLakfAeel.gvpfefnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.... 245
                         t+ rLa+fA+ + +++fef+ +v ++ ++l   ++++v+pg ++aV+lv+   r+   s +     +++L  ++sl+P +v +++++    
  Brast09G083400.1.p 254 TEARLARFAAGCpNLRFEFEGIVNDNGSALhGRNNINVDPGSTVAVSLVFPAARTS--SRE----ARSTLAYIRSLNPSLVFLIDKDavqd 338
                         ********998769********9999999945789***************999886..333....3679****************984433 PP

                GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr.erleeaGFkpvplsekaak 335
                         ++ +++s+l rf+ +l+yy+a+f+sl++ lp++s er  +Er  lg ei  + a  +++       l++W  e++e aGF+ ++ls+++++
  Brast09G083400.1.p 339 SNNSGASLLPRFAASLRYYAAVFESLHECLPADSAERLAIERDHLGAEIGRAMASLEDR------ALATWTaEAMEGAGFEGARLSSRTVS 423
                         455667*********************************************99998887......899**7368999************** PP

                GRAS 336 qaklllrkvk..sdgyrve....ee....sgslvlgWkdrpLvsvSaWr 374
                         qaklll++ +    g+rv     e+      s+ lgW+dr+L++++aWr
  Brast09G083400.1.p 424 QAKLLLKMKSggCGGFRVIeggaEDdgagVYSMSLGWRDRALITATAWR 472
                         *******99975567*998455555343333566**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.89249442IPR005202Transcription factor GRAS
PfamPF035141.2E-7876472IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MNLTLSLGVD GGGAAAKKRK VRDGDVGAAG DGGDCGRTRV MRLLQARDRV AKVKLGNQYH  60
DEEDDDGSRC GGLRLTRLLL SSAAAGEAGD THAAAVALRE VSRHASFRGG DPVQRVAAHF  120
ADALASRLLL LSPRAPAPVA ASTPLKTRAE QSFLAFTMFY QASPLYQFAH FTANQAILEA  180
FETSCTRRSL HVVDLDVSFG FQWPSLIQSL SDAAATSSPQ SSSHDDSGDC DAEPAAVSLR  240
ITGFGKSADA LRDTEARLAR FAAGCPNLRF EFEGIVNDNG SALHGRNNIN VDPGSTVAVS  300
LVFPAARTSS REARSTLAYI RSLNPSLVFL IDKDAVQDSN NSGASLLPRF AASLRYYAAV  360
FESLHECLPA DSAERLAIER DHLGAEIGRA MASLEDRALA TWTAEAMEGA GFEGARLSSR  420
TVSQAKLLLK MKSGGCGGFR VIEGGAEDDG AGVYSMSLGW RDRALITATA WRPSVSNNHL  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-40524734380Protein SCARECROW
5b3h_A9e-41524733379Protein SCARECROW
5b3h_D9e-41524733379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G083400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064582e-35AL606458.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10, complete sequence.
GenBankAP0149602e-35AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCR8551012e-35CR855101.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0308C03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227137.10.0scarecrow-like protein 23
TrEMBLI1IXU00.0I1IXU0_BRADI; Uncharacterized protein
STRINGBRADI5G10320.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-38GRAS family protein