PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G066100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 460aa    MW: 51059 Da    PI: 8.3017
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G066100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.000986686121
                        EEETTTTEEESSHHHHHHHHH CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHir 21
                        y+C+ C+k F r  nL+ H r
  Brast09G066100.1.p 66 YVCEVCHKGFQRDQNLQLHRR 86
                        9******************97 PP
2zf-C2H211.30.0011142164123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC+ C+k +  +s+ + H + +
  Brast09G066100.1.p 142 WKCERCSKKYAVQSDWRAHTKIC 164
                         58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.44E-66588No hitNo description
PROSITE profilePS5015711.0116688IPR007087Zinc finger, C2H2
SMARTSM003550.086688IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.9E-56688IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035550107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.44E-6137162No hitNo description
SMARTSM00355210142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MSQTSEEESV INFQQQQKLA VYQAALTKGG SIIPAAKKRR SHPGNPDPDA EVVAFSPKTL  60
LATNRYVCEV CHKGFQRDQN LQLHRRCHNL PWKLKQTNST EAKKKVYICP EVTCPHHDAS  120
RALGDLTGIK KHYSRKHGEK KWKCERCSKK YAVQSDWRAH TKICGTKEYR CDCGTIFSRK  180
DSFITHRAFC DALTEDNSRI NQSLAAMVGS LHGQQQDIFP HTIPSASSSP TDAVGNFSGH  240
NQSSDNFPRS LSPYTFIARS TSLLSNQILP DESSIPIDGS EPNSPFISMS SPYISATALL  300
QKAAEMGAKT SEDPISPLLL KGFPNYFNTR GHIGISSAIL GTSTANSARK KTVEDNRTYM  360
NSLWAGSCIR HNTVPLIGLP PFSMRAENRS TNMDDEDHMQ QNAHESIFGV RDMGLTQDFL  420
GLGGNGNVEM SDETYNRDTT LSYSDGQQKS QQDNYSYHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-34138201366Zinc finger protein JACKDAW
5b3h_F5e-34138201366Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13741KRRSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G066100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311787.10.0protein indeterminate-domain 12-like
TrEMBLA0A3B6C9880.0A0A3B6C988_WHEAT; Uncharacterized protein
STRINGBRADI5G08537.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-102indeterminate(ID)-domain 2