PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G065300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 265aa    MW: 27939.4 Da    PI: 5.048
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G065300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-183989155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g
  Brast09G065300.1.p 39 TRYLGVRRRP-WGRYAAEIRDPAT---KDRHWLGTFDTAEEAAVAYDRAARSLRG 89
                        5799******.**********843...4*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.61E-283998No hitNo description
PfamPF008479.3E-114089IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-284097IPR001471AP2/ERF domain
SMARTSM003803.7E-3340103IPR001471AP2/ERF domain
PROSITE profilePS5103221.5354097IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-214097IPR016177DNA-binding domain
PRINTSPR003671.9E-84152IPR001471AP2/ERF domain
PRINTSPR003671.9E-86379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MNFSSYFFSS SSSSEKKSSS SSSSSSKRRQ QQQADANPTR YLGVRRRPWG RYAAEIRDPA  60
TKDRHWLGTF DTAEEAAVAY DRAARSLRGV RARTNFAYPD LPPGSSVTPY LSPDLAAADS  120
DSVHDLLQPF YADPLKPAHH VQQGGAPAAA DIGNEHGNMY GGAAPADMSA LMMGDGVGIA  180
NMPGDLPVGD SMDFSSMYGP GNNNGGWCEA SEFGGYSASA AGGHGVYFEE GYVHSPLFSP  240
MPAADDAGAH DGFQLGGSSA SYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-184196662ATERF1
3gcc_A9e-184196662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G065300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282753e-95KJ728275.1 Zea mays clone pUT6553 AP2-EREBP transcription factor (EREB125) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579639.11e-110ethylene-responsive transcription factor LEP
TrEMBLA0A0Q3I8A01e-108A0A0Q3I8A0_BRADI; Uncharacterized protein
STRINGTraes_2BL_5DC21F3CD.11e-98(Triticum aestivum)
STRINGTraes_2BL_E7871AFBA.11e-98(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.14e-31ERF family protein