PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G059100.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CAMTA
Protein Properties Length: 1023aa    MW: 113760 Da    PI: 5.6257
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G059100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1170.62.3e-53111272117
                CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                         lke ++rwlk++e++ iL n+e+  +t+e++++p+sgsl+Lynr++ r+frkDGy w++kkdg+tv E+he+LKvg+ ++l+cyYah++en
  Brast09G059100.2.p  11 LKEaRSRWLKPSEVYYILLNHERLPITHEPPNKPPSGSLFLYNRRVNRFFRKDGYAWRRKKDGRTVGEAHERLKVGNLDALSCYYAHGDEN 101
                         56669************************************************************************************** PP

                CG-1  92 ptfqrrcywlLeeelekivlvhylev 117
                         p fqrrc+w+Le ++++ivlv+y++v
  Brast09G059100.2.p 102 PCFQRRCFWMLEPAYDHIVLVQYRDV 127
                         ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.2467133IPR005559CG-1 DNA-binding domain
SMARTSM010762.1E-7010128IPR005559CG-1 DNA-binding domain
PfamPF038596.9E-4613127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.8E-9444532IPR013783Immunoglobulin-like fold
SuperFamilySSF812967.0E-16447530IPR014756Immunoglobulin E-set
CDDcd001022.14E-5448531No hitNo description
PfamPF018333.0E-8448528IPR002909IPT domain
Gene3DG3DSA:1.25.40.203.1E-15643738IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.35E-15644739IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.326645737IPR020683Ankyrin repeat-containing domain
CDDcd002045.82E-14650737No hitNo description
PfamPF136371.6E-5664699No hitNo description
PROSITE profilePS5008810.633678710IPR002110Ankyrin repeat
SMARTSM002480.0013678707IPR002110Ankyrin repeat
SMARTSM002483800717746IPR002110Ankyrin repeat
SMARTSM0001524798820IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.218799828IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.72E-7839904IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.48857886IPR000048IQ motif, EF-hand binding site
SMARTSM000156.9858878IPR000048IQ motif, EF-hand binding site
PfamPF006120.0027859877IPR000048IQ motif, EF-hand binding site
SMARTSM000153.4E-6879901IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.42880908IPR000048IQ motif, EF-hand binding site
PfamPF006123.3E-5881901IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1023 aa     Download sequence    Send to blast
MSQSFDINVL LKEARSRWLK PSEVYYILLN HERLPITHEP PNKPPSGSLF LYNRRVNRFF  60
RKDGYAWRRK KDGRTVGEAH ERLKVGNLDA LSCYYAHGDE NPCFQRRCFW MLEPAYDHIV  120
LVQYRDVSEG RNYSASVSNE SAGSLSALSY PNDIYGKQYH SSTSGSSEGS ESRHSYSNSI  180
NEVSSGSASK MYNNHSGVLL SIPEFEQTTV IGAPELGQSS LEQSSEFCLT NKSGLKQALK  240
KIGEHLGLAD DDDDDDYIYI NQSQPLDFDT NIEAADRQGH HIRNSLGDVS GEKQANRIQA  300
GETQNGVSRG ILPSWCNVLQ SNSVSSASSA YMQSSEYQPP GGLDSSDLQL QLSAATRFLL  360
GPEDSIDSPS YNYIARDEGI NGIDTLSVHN SSLQSCLNPD WQSSTPITLE SNACGSEIFE  420
LLSDHCQFDP SSGLDTRLTL TQKQRFNIHE ISPEWAFCSE VTKVIITGDF LCDPSNSRWG  480
VMFGDNEVPV EIVQPGVLRC HTPVHSSGKL TLCITNGNRE VCSEVKDFEF RAKPTVSSST  540
DLTVSSRSMK SSEELSLLAK FARMLLCENG SSAVLDGDPQ STLRPKLNMN EEHWQQLIDG  600
LNVGCENPLS MVDWILEELL KSKLQQWLSL KLQGNDGTCC SLSKHEQGII HLISALGYEW  660
ALSSVLGAGV GINLRDSNGW TALHWAAYFG REKMVAALLA VGASAPAVTD PTAQDPVGKT  720
AAFLASKRGH MGLAGYLSEV SLTSYLASLT IEESDISKGS AAIEAERAVE SISQRSAQLH  780
GGTEDELSLK DSLAAVRNAA QAAARIQNAF RAFSFRKRQH KDARLKDEYG MTQEDIDELA  840
AASRLYYQHH VSNYQFSDKA AVSIQKKYRG WKGRKNFLNM RRNVVKIQAH VRGHQVRKKY  900
KTFVSTVSVL EKVILRWRRK GHGLRGFRAE QPAMIAAEEE EEEDDDDFDD DEAVKIFRRQ  960
KVDESVKEAV SRVLSMVESP EARMQYRRML EEFRQATVET GASDEVTSIL NDDLLMGIDF  1020
MF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G059100.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239810.10.0calmodulin-binding transcription activator 4 isoform X3
SwissprotQ9FYG21e-167CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLI1IX380.0I1IX38_BRADI; Uncharacterized protein
STRINGBRADI5G08167.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-141Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]