PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G059100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CAMTA
Protein Properties Length: 1024aa    MW: 113903 Da    PI: 5.6965
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G059100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1170.62.3e-53121282117
                CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                         lke ++rwlk++e++ iL n+e+  +t+e++++p+sgsl+Lynr++ r+frkDGy w++kkdg+tv E+he+LKvg+ ++l+cyYah++en
  Brast09G059100.1.p  12 LKEaRSRWLKPSEVYYILLNHERLPITHEPPNKPPSGSLFLYNRRVNRFFRKDGYAWRRKKDGRTVGEAHERLKVGNLDALSCYYAHGDEN 102
                         56669************************************************************************************** PP

                CG-1  92 ptfqrrcywlLeeelekivlvhylev 117
                         p fqrrc+w+Le ++++ivlv+y++v
  Brast09G059100.1.p 103 PCFQRRCFWMLEPAYDHIVLVQYRDV 128
                         ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.2468134IPR005559CG-1 DNA-binding domain
SMARTSM010762.1E-7011129IPR005559CG-1 DNA-binding domain
PfamPF038596.9E-4614128IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.8E-9445533IPR013783Immunoglobulin-like fold
SuperFamilySSF812967.0E-16448531IPR014756Immunoglobulin E-set
CDDcd001022.14E-5449532No hitNo description
PfamPF018333.0E-8449529IPR002909IPT domain
Gene3DG3DSA:1.25.40.203.1E-15644739IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.35E-15645740IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.326646738IPR020683Ankyrin repeat-containing domain
CDDcd002045.83E-14651738No hitNo description
PfamPF136371.6E-5665700No hitNo description
PROSITE profilePS5008810.633679711IPR002110Ankyrin repeat
SMARTSM002480.0013679708IPR002110Ankyrin repeat
SMARTSM002483800718747IPR002110Ankyrin repeat
SMARTSM0001524799821IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.218800829IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525404.25E-7840905IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.48858887IPR000048IQ motif, EF-hand binding site
SMARTSM000156.9859879IPR000048IQ motif, EF-hand binding site
PfamPF006120.0027860878IPR000048IQ motif, EF-hand binding site
SMARTSM000153.4E-6880902IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.42881909IPR000048IQ motif, EF-hand binding site
PfamPF006123.3E-5882902IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1024 aa     Download sequence    Send to blast
MITKCFDINV LLKEARSRWL KPSEVYYILL NHERLPITHE PPNKPPSGSL FLYNRRVNRF  60
FRKDGYAWRR KKDGRTVGEA HERLKVGNLD ALSCYYAHGD ENPCFQRRCF WMLEPAYDHI  120
VLVQYRDVSE GRNYSASVSN ESAGSLSALS YPNDIYGKQY HSSTSGSSEG SESRHSYSNS  180
INEVSSGSAS KMYNNHSGVL LSIPEFEQTT VIGAPELGQS SLEQSSEFCL TNKSGLKQAL  240
KKIGEHLGLA DDDDDDDYIY INQSQPLDFD TNIEAADRQG HHIRNSLGDV SGEKQANRIQ  300
AGETQNGVSR GILPSWCNVL QSNSVSSASS AYMQSSEYQP PGGLDSSDLQ LQLSAATRFL  360
LGPEDSIDSP SYNYIARDEG INGIDTLSVH NSSLQSCLNP DWQSSTPITL ESNACGSEIF  420
ELLSDHCQFD PSSGLDTRLT LTQKQRFNIH EISPEWAFCS EVTKVIITGD FLCDPSNSRW  480
GVMFGDNEVP VEIVQPGVLR CHTPVHSSGK LTLCITNGNR EVCSEVKDFE FRAKPTVSSS  540
TDLTVSSRSM KSSEELSLLA KFARMLLCEN GSSAVLDGDP QSTLRPKLNM NEEHWQQLID  600
GLNVGCENPL SMVDWILEEL LKSKLQQWLS LKLQGNDGTC CSLSKHEQGI IHLISALGYE  660
WALSSVLGAG VGINLRDSNG WTALHWAAYF GREKMVAALL AVGASAPAVT DPTAQDPVGK  720
TAAFLASKRG HMGLAGYLSE VSLTSYLASL TIEESDISKG SAAIEAERAV ESISQRSAQL  780
HGGTEDELSL KDSLAAVRNA AQAAARIQNA FRAFSFRKRQ HKDARLKDEY GMTQEDIDEL  840
AAASRLYYQH HVSNYQFSDK AAVSIQKKYR GWKGRKNFLN MRRNVVKIQA HVRGHQVRKK  900
YKTFVSTVSV LEKVILRWRR KGHGLRGFRA EQPAMIAAEE EEEEDDDDFD DDEAVKIFRR  960
QKVDESVKEA VSRVLSMVES PEARMQYRRM LEEFRQATVE TGASDEVTSI LNDDLLMGID  1020
FMF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G059100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311653.10.0calmodulin-binding transcription activator 4 isoform X2
SwissprotQ9FYG21e-167CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A0Q3E3A20.0A0A0Q3E3A2_BRADI; Uncharacterized protein
STRINGBRADI5G08167.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-141Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]