PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast09G058200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 219aa MW: 23393.6 Da PI: 6.3465 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.5 | 2.1e-12 | 136 | 193 | 41 | 98 |
TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 +grsWe+++ ++++ l +GW++F+ +n L+ gD +vF+l+ g+ ++ + v+v+r Brast09G058200.1.p 136 WQGRSWEMRF--TGGRPIQRLDAGWRSFAADNALRLGDGCVFELIsGDgEGVVFQVQVLR 193 589*******..88888899***********************99566566666666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.6E-15 | 97 | 194 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.79E-14 | 97 | 194 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.02E-12 | 98 | 193 | No hit | No description |
SMART | SM01019 | 0.0067 | 100 | 195 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.182 | 100 | 195 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-9 | 114 | 189 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MCRDHPLHLW MQDSECGLFR AEAVPAESST ATTPPLDPSH HCSQEPGGIA GVKDNAVPSP 60 AAGDSSQAAI AAGPPARPGN ARVEKMQQPR ILPLLGKPYF ACVVCRSHIQ PPFQVVVPRS 120 LAPFLPPKPA PATLTWQGRS WEMRFTGGRP IQRLDAGWRS FAADNALRLG DGCVFELISG 180 DGEGVVFQVQ VLRAEIPEGI RERAGGYNSS SPIVIEED* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast09G058200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014751250.1 | 1e-119 | B3 domain-containing protein Os04g0386900 | ||||
Swissprot | Q7XLP4 | 3e-63 | Y4869_ORYSJ; B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | A0A0Q3H2F3 | 1e-117 | A0A0Q3H2F3_BRADI; Uncharacterized protein | ||||
STRING | MLOC_48372.1 | 2e-91 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8954 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast09G058200.1.p |
Publications ? help Back to Top | |||
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