PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G056000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 364aa    MW: 39867.3 Da    PI: 4.8953
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G056000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11161205655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            Er+RR r+++++ eLr+l+P+      +K++Ka+i   AveY+k+Lq
  Brast09G056000.1.p 161 IVSERKRRFRMKEKLYELRSLVPNI-----TKMDKASIIADAVEYVKNLQ 205
                         568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.09E-16152222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.61E-14153206No hitNo description
PROSITE profilePS5088816.139155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16157220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9161205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-13161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEHHLQRHLS PSQTQEEDLM ISPDFFVDVD QLRFHDADVS GAAAGGVVVD DGASWMEDLM  60
QLGDELLFGA GGTGEDDREA VVDAMADDGR RYQLEAWYDD ERRLQQEEYE LGSPEQPCSY  120
DDVISPGGSG DHHQGRAGEH HPDDNGDLSA TRKRRDRSKT IVSERKRRFR MKEKLYELRS  180
LVPNITKMDK ASIIADAVEY VKNLQTHARK LKEDVAALEA RPGLPRRMQQ QQQQQDRRRQ  240
AGGGRGNDEG ISRPRGGGGG GGARVASVGA AQVGDGLFFV TVECERRDGV AAPLCAAVES  300
LACFRVQSST LGCSSDRVVS TLTLKVSEAG EDMAINERTV KLWVLAALLK EGFRPEASTA  360
EIC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152167KRRDRSKTIVSERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G056000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8350401e-67CT835040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239803.20.0transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLI1IX091e-180I1IX09_BRADI; Uncharacterized protein
STRINGBRADI5G07720.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.18e-36FER-like regulator of iron uptake