PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G043400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 261aa    MW: 28657.5 Da    PI: 4.6513
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G043400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.2e-1378122655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI++Lq
  Brast09G043400.1.p  78 ILMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIQKLQ 122
                         579*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.99972121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-1776137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-1476126No hitNo description
PfamPF000101.1E-1077122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1678134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1578127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.2E-5179247No hitNo description
CDDcd048730.00934181244No hitNo description
PROSITE profilePS516719.576182258IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEPDMGDSFA YYWETQRYLE SEELVDSIFA GATEDAMSYY DSSSPDGSHS SSAPAGAGSA  60
MAPGNNAEPG TGGANKNILM ERDRRRKLNE KLYALRSVVP NITKMDKASI IKDAIEYIQK  120
LQAEERRMAA ELPSEEHEVC YSAEKKVKRA LSVSSLNDAL SVSPPLEVLE VRVSEVGEKV  180
LVVSVTCGKQ RDAMAKVCRV LEELRLRVIT ANITSVSGCL LHTLFIEVDD MDRFQTKEMI  240
EAALSQLDAI RSPTLSSMSY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G043400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579501.11e-143transcription factor bHLH35
TrEMBLI1IWM51e-142I1IWM5_BRADI; Uncharacterized protein
STRINGBRADI5G05110.21e-142(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.17e-53bHLH family protein