PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G035800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 330aa    MW: 36123.3 Da    PI: 8.2935
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G035800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.6e-151462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd +l++   ++G+g +W + +++ g++R++k+c++rw++yl
  Brast09G035800.1.p 14 KGPWSPEEDAKLKEFMDKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding33.87.7e-1169111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +T  Ed  +    +  G++ W+ Ia+ ++ gRt++++k++w++
  Brast09G035800.1.p  69 GEFTDHEDRVICSMYASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                         789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.066966IPR017930Myb domain
SuperFamilySSF466892.55E-2611109IPR009057Homeodomain-like
SMARTSM007174.8E-111364IPR001005SANT/Myb domain
PfamPF002491.8E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-231569IPR009057Homeodomain-like
CDDcd001672.19E-81662No hitNo description
SMARTSM007171.6E-1067115IPR001005SANT/Myb domain
PROSITE profilePS5129415.42567117IPR017930Myb domain
PfamPF002499.5E-969111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2270117IPR009057Homeodomain-like
CDDcd001672.43E-770113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGRAPCCDKN NVKKGPWSPE EDAKLKEFMD KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FTDHEDRVIC SMYASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKLMGS  120
NTGSGPPPRV PRHHQHQHRP VQLLPYSSSP SSNYNTSSFF PGAGSQLLNA EPHHNLIIPT  180
LTLQPQLQDY TMLSSSLNSM ANHNNNNNVD ASVMNHMVKE ECGAMIVFGG EQQSCSSSDG  240
TQYGQFGGGR HGKELSMSFD NNNNGSYGYG GYHHSNGTAV EQEVQAQLDY GYEEIKQLLM  300
TAAGAGADGG GLHDQLISSS HAAGKLTMM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G035800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3686601e-151AK368660.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077K09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581397.10.0transcription factor RAX2
TrEMBLI1IWF50.0I1IWF5_BRADI; Uncharacterized protein
STRINGBRADI5G03882.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-75myb domain protein 36