PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G016900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family E2F/DP
Protein Properties Length: 473aa    MW: 51621.7 Da    PI: 6.3367
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G016900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP80.91.1e-25191256171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         r+++sL+llt+kf++ll+ +e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liek  kn irwkg
  Brast09G016900.1.p 191 RYDNSLGLLTKKFINLLRGAEDGTLDLNKAAETL---EV--QKRRIYDITNVLEGVDLIEKGLKNMIRWKG 256
                         689*******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-27188257IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-32191256IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.3E-16191254IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023194.1E-23193256IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146602.26E-32267380No hitNo description
SuperFamilySSF1440741.46E-21269379No hitNo description
PfamPF164211.4E-23272377IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDGSSSLPLP RPPPAPQPPL PPQIFLRCPA PPQPPGAAPA PAHVHFFRAP SPIPMYSPRI  60
PGPRYTAARP PAPPPPAAPA AMAPPRPPPL TQAAAAPAHP PSSEAATSPF PPPKAAGKGR  120
PPKPKAPDNE QKIEKENAQS EVGKVETQQG HHKESTTGPI KGIKRPKKQK GSSHGATEGD  180
AGPLFSPNNC RYDNSLGLLT KKFINLLRGA EDGTLDLNKA AETLEVQKRR IYDITNVLEG  240
VDLIEKGLKN MIRWKGFDMI MPKEMERRTS ALKEEIESSY DEDYRLDEEI LKVQAKLEAL  300
KVDKDTRKWL YLSKEDIIKI PRFQGSTLFA IKAPRGTCVE VRDPNADMDI FKDLESQEKQ  360
YQILLRSSMG PIDCYLISDH QEVSNPDQMA PDNLDPTVTT GSSQIPQQVD CHPSQASEIG  420
ESNIVGKKAS EPSRTQELMS GILRIVPADG DIDADYWLAS EVDATMIDTW AT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-21191257774PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G016900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239658.10.0transcription factor E2FC
TrEMBLA0A0Q3NYW20.0A0A0Q3NYW2_BRADI; Uncharacterized protein
STRINGBRADI5G01920.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.32e-74E2F transcription factor 1