PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G016600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 297aa    MW: 32676.1 Da    PI: 4.6083
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G016600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-1190135555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + + Er RR+r+N+++ +Lr ++P+      +K++Ka++ + A+ YI +Lq
  Brast09G016600.1.p  90 NVILERHRRRRLNEKLYTLRGVVPNI-----TKMDKASVIQDAIAYIEELQ 135
                         4578*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.86E-1285139No hitNo description
PROSITE profilePS5088815.89185134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-1788157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-990135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-1491140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1591153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MESDLDLSFD FSWQTPLFFD LDLDLGVVDS IYMPAAAEED MPLPLPAEED SLSGLHSCCY  60
DDSSSPDGAC CNSTLTTKTT EAMASRVSKN VILERHRRRR LNEKLYTLRG VVPNITKMDK  120
ASVIQDAIAY IEELQEQERR LLAEISALEP AADAVKTESS FVSAGEVVEE EEEDEPGMGQ  180
RRKKMRRTGS ASSINDDASF CFCSPATRPV EILELQVTEV GQKMAVVSFR HGKTRRGALA  240
NVCKALESLH RLRVITACIT TISGNIVHTM FVEAEGMSGS RVIKEMVRAA LGQFDI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179186QRRKKMRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G016600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3598502e-53AK359850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1104J03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580572.11e-153transcription factor bHLH35
TrEMBLI1IVT71e-152I1IVT7_BRADI; Uncharacterized protein
STRINGBRADI5G01900.11e-153(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-34bHLH family protein