PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G013800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 422aa    MW: 47467.4 Da    PI: 5.1983
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G013800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.52.5e-1868158199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f k +++s+v +  +l lp  f+++h  + + ++ + lede+gr +e ++   +++++  l++GW++F+ ++g+k+gD vvF+l+g+++f 
  Brast09G013800.1.p  68 FAKRMLKSHVVRGFWLGLPSGFCRQHL-P-KHDVIIALEDEDGRNYEANY--LGHKQG--LSGGWRDFALQHGIKVGDAVVFQLMGSTRF- 151
                         8899**********************5.2.36789***************..999988..9************************98888. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +v ++r+
  Brast09G013800.1.p 152 -KVYILRE 158
                         .8888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-2062159IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-2364159IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-2666157No hitNo description
SMARTSM010191.3E-2068159IPR003340B3 DNA binding domain
PfamPF023627.4E-1768158IPR003340B3 DNA binding domain
PROSITE profilePS5086313.76168159IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MEQKPASVDS NSSSSRSRSR SDNDDDSAPM VPDAGGRNKY ASVQDIHSSA WERALEVKEK  60
LPAEDPSFAK RMLKSHVVRG FWLGLPSGFC RQHLPKHDVI IALEDEDGRN YEANYLGHKQ  120
GLSGGWRDFA LQHGIKVGDA VVFQLMGSTR FKVYILRENM FTITDGALGL LSLDTSNENN  180
ISKEESSNKD VKSMEEPEVT RASSKVADDD DSNINVPNQE AVDDDIISPD SDTDFDGVTS  240
FRNFDIVVDG SVINRELFPD RQRRTYYELC QARKSLLHKN LLKKINPTLA LGVIIETVNI  300
AEGIRASRAS SREDLRLWKE TLESFELLGM DVTFMRKRLD DLLGLLPSRS LGDCLVVDEE  360
HERYEEVKLE HKRASKKMRA LELKMLSLKD ALKEMDAAIE EMESSVKKNA QAMRQRATAP  420
W*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G013800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311646.10.0B3 domain-containing protein Os01g0234100 isoform X1
RefseqXP_024311647.10.0B3 domain-containing protein Os01g0234100 isoform X2
SwissprotQ0JP991e-138Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A2K2CET40.0A0A2K2CET4_BRADI; Uncharacterized protein
STRINGEMT062481e-149(Aegilops tauschii)
STRINGMLOC_20970.11e-149(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-36B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]