PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast09G003900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 165aa MW: 18026.2 Da PI: 9.514 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.9 | 8.7e-06 | 53 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F++ L H+++H Brast09G003900.1.p 53 YTCGYCKREFRSAQALGGHMNVH 75 9********************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.1E-6 | 50 | 80 | No hit | No description |
PROSITE profile | PS50157 | 11.531 | 53 | 80 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.6E-7 | 53 | 77 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 55 | 75 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 165 aa Download sequence Send to blast |
MESRSTTRSR SSGEHLQRHG GGQQQQQLRQ PWSYGVGCTG GVSWPAALQR SSYTCGYCKR 60 EFRSAQALGG HMNVHRRERA RLRHYYCSGG YPAAMTIHRQ QANPPPPLSP QHFTVVYSFF 120 SAAATTATTT TMTKDALMEV DLELGVGGFG RDGGLDLELR LGCS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast09G003900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010240689.1 | 5e-61 | transcriptional regulator SUPERMAN | ||||
TrEMBL | A0A0Q3I5Q7 | 1e-66 | A0A0Q3I5Q7_BRADI; Uncharacterized protein | ||||
STRING | Pavir.J31403.1.p | 8e-31 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4667 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23130.1 | 8e-18 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast09G003900.1.p |