PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast09G002000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 307aa MW: 31828.7 Da PI: 6.2419 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00069 | 208 | 230 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H Brast09G002000.1.p 208 HECSICGAEFASGQALGGHMRRH 230 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.64E-8 | 113 | 136 | No hit | No description |
Pfam | PF13912 | 9.7E-12 | 113 | 138 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 114 | 136 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.201 | 114 | 141 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 116 | 136 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.64E-8 | 203 | 230 | No hit | No description |
Pfam | PF13912 | 1.3E-12 | 207 | 231 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 208 | 230 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.429 | 208 | 235 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 210 | 230 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 307 aa Download sequence Send to blast |
MEAAAGGDIV VAKGKRSKRQ RAHAAAAPEV VTTPAADDSA GAAESSSLSS VVVAEEEEEA 60 ASGCVTEEEE DMAMCLMLLA RGGHGGSTSA AMAAEGNKKF RSRQREEGSG ELVYECRTCS 120 KRFPSFQALG GHRTSHKKPR LPTPKADSED LKKAPSMSPP PPSPTDPAAL LAIPAPATPP 180 PPAAMNPNPK QQRRDSTAMA TGGSSRVHEC SICGAEFASG QALGGHMRRH RPLVPAAAAA 240 SEGEEPTTAV RTKEKSLLEL DLNMPPSDDD VHGTTKPAAF VFNVNDLLFP APTSAPASAM 300 VVDCHY* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast09G002000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK108645 | 9e-31 | AK108645.1 Oryza sativa Japonica Group cDNA clone:002-148-B03, full insert sequence. | |||
GenBank | AL606603 | 9e-31 | AL606603.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050N09, complete sequence. | |||
GenBank | AL606654 | 9e-31 | AL606654.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0028M18, complete sequence. | |||
GenBank | AP014960 | 9e-31 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 9e-31 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CT833697 | 9e-31 | CT833697.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN043G17, full insert sequence. | |||
GenBank | CU405777 | 9e-31 | CU405777.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C113D03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014751110.1 | 1e-115 | zinc finger protein ZAT5 | ||||
TrEMBL | I1IVF0 | 1e-113 | I1IVF0_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G00530.1 | 1e-114 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28200.1 | 2e-32 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast09G002000.1.p |