PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G248600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 295aa    MW: 32188.4 Da    PI: 5.9899
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G248600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-10158207255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + + Y++sLq
  Brast08G248600.1.p 158 RDSHSLAERVRREKISEKMMLLQSLVPGC----DKVTGKAMMLDEIISYVQSLQ 207
                         899*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-17153226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-17153222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-12154210No hitNo description
PROSITE profilePS5088815.701156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-8158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-10162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEGFFFSTQH EHHHSYYEDP EPLPTQLGFS ASCRNLETAA AMAYESSSSS PLASMVYSPS  60
LLLLQQQQES FPPFEYEALL AAAAVGDDKR RMVSIERSGT TSLGSAQEMD GSRKHKRNNA  120
NVASVKEKRP RGHGGADVDA KEAPAGYIHV RAKRGQARDS HSLAERVRRE KISEKMMLLQ  180
SLVPGCDKVT GKAMMLDEII SYVQSLQNQV VFLSMKLATL NPMMMYEFGL DIGMYPDTPQ  240
VMATGAVPVL LPHTSLVETT GLAAQNGDGG SSCGSAMQHL QGLQQEEFSC FFDQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G248600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231876.11e-156transcription factor bHLH76
TrEMBLI1HN851e-155I1HN85_BRADI; Uncharacterized protein
STRINGBRADI2G39970.11e-155(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP167931212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.18e-44bHLH family protein