PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G235400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 330aa    MW: 36284.2 Da    PI: 5.1366
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G235400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding67.62.2e-214188148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEd llvd+v+q+G g+W++ ar+ g++Rt+k+c++rw++yl
  Brast08G235400.1.p 41 RGPWTAEEDALLVDYVAQHGEGRWNSLARCAGLRRTGKSCRLRWLNYL 88
                        89********************************************97 PP
2Myb_DNA-binding51.42.4e-1694137146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Brast08G235400.1.p  94 RGNITAEEQLLILELHSRWGNR-WSKIAQRLP-GRTDNEIKNYWRT 137
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.6413692IPR017930Myb domain
SuperFamilySSF466891.24E-3139135IPR009057Homeodomain-like
SMARTSM007174.4E-174090IPR001005SANT/Myb domain
PfamPF002492.2E-184188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-254295IPR009057Homeodomain-like
CDDcd001674.34E-144388No hitNo description
PROSITE profilePS5129418.80493143IPR017930Myb domain
SMARTSM007171.1E-1493141IPR001005SANT/Myb domain
PfamPF002494.6E-1594137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2396141IPR009057Homeodomain-like
CDDcd001676.20E-1298137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDMDKEYYYM GMETAMSPAG SSEPVAAKAA TASEDEGDLR RGPWTAEEDA LLVDYVAQHG  60
EGRWNSLARC AGLRRTGKSC RLRWLNYLRP DVRRGNITAE EQLLILELHS RWGNRWSKIA  120
QRLPGRTDNE IKNYWRTRVQ KHARQLRCDV NSRQFRDVVR LVWMPRLIER MHADGAANNN  180
ENAGVPPAAP ETTATTMTAR VDHHHGMSRS EPMIGRASDA AAAMSPDDTS STLRSSLSAA  240
EMASTHEGRC RLSPCSAPVA TNVDGSTTAN CVVQGDEGAM CGDDHAIHGG DSDELGGSWS  300
ELLAATGLPE FEFGDFDDNL WSLEDIYAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-26381411103MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-253813524120MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G235400.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569075.10.0transcription factor JAMYB
TrEMBLI1HMR90.0I1HMR9_BRADI; Uncharacterized protein
STRINGBRADI2G38560.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.17e-78myb domain protein 108