PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G226800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 373aa    MW: 42404.9 Da    PI: 8.4014
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G226800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-067799123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ Cg +F+ + +Lk+H+++H
  Brast08G226800.1.p 77 HDCEECGARFKKPAHLKQHMQSH 99
                        56*******************99 PP
2zf-C2H218.74.7e-06105129123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         + C+   C+ s++rk++L+rH+ tH
  Brast08G226800.1.p 105 FACHvdGCPFSYRRKDHLNRHLLTH 129
                         78*********************99 PP
3zf-C2H218.65.2e-06134159123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         + Cp   C++ Fs+k n++rH +  H
  Brast08G226800.1.p 134 FICPteGCNRKFSTKGNMQRHVQEmH 159
                         78*******************99877 PP
4zf-C2H218.74.6e-06171195123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         y Cp  +Cgk+F+  s L++H  +H
  Brast08G226800.1.p 171 YICPevNCGKTFKFASKLHKHEDSH 195
                         89*******************9888 PP
5zf-C2H216.91.7e-05262286223
                         EET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                         kC+  dC+ sFs ksnL +Hi+  H
  Brast08G226800.1.p 262 KCHfeDCKCSFSKKSNLDKHIKAvH 286
                         7********************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355113153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-57496IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.85877104IPR007087Zinc finger, C2H2
SMARTSM003550.00267799IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SuperFamilySSF576673.33E-1190131No hitNo description
Gene3DG3DSA:3.30.160.603.3E-1297131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0022105129IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141105134IPR007087Zinc finger, C2H2
PROSITE patternPS000280107129IPR007087Zinc finger, C2H2
SuperFamilySSF576671.96E-7115165No hitNo description
Gene3DG3DSA:3.30.160.602.4E-8132160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.032134164IPR007087Zinc finger, C2H2
SMARTSM003554.5E-5134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-5167195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.803171195IPR007087Zinc finger, C2H2
SMARTSM003550.059171195IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280173195IPR007087Zinc finger, C2H2
SMARTSM003556.1203228IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280205228IPR007087Zinc finger, C2H2
SMARTSM0035532231252IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.92E-6242299No hitNo description
Gene3DG3DSA:3.30.160.609.1E-5242283IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.098261286IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.863261291IPR007087Zinc finger, C2H2
PROSITE patternPS000280263286IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-5285315IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.9292318IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.559292318IPR007087Zinc finger, C2H2
PROSITE patternPS000280294318IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGEGDFDSGD AGVRETETAA AAAPVRDIRR YKCEFCDVVR SKKQLIRAHV LQHHKDEVDD  60
LEYSEAGGGV RHKEISHDCE ECGARFKKPA HLKQHMQSHS SETPFACHVD GCPFSYRRKD  120
HLNRHLLTHQ GKLFICPTEG CNRKFSTKGN MQRHVQEMHK DGSPCESKKE YICPEVNCGK  180
TFKFASKLHK HEDSHVKLDY TEVICCEPGC LKTFTNVECL KAHNQSCHRY VQCDVCDTKQ  240
LKKNFKRHQR HHEGSCVTET VKCHFEDCKC SFSKKSNLDK HIKAVHEQSR PFACGFSGCG  300
RKFSYKHVRD SHEKSTAHVY FEGDFVEAGP HPGGRKRKPI PVETFTRKRV AAPDDVPTFA  360
DGTGYLRWLL SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A8e-188122519157PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D8e-188122519157PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G226800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566649.10.0transcription factor IIIA isoform X1
SwissprotQ84MZ41e-113TF3A_ARATH; Transcription factor IIIA
TrEMBLI1HMH60.0I1HMH6_BRADI; Uncharacterized protein
STRINGBRADI2G37790.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-116transcription factor IIIA