PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G223100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 197aa    MW: 20718.8 Da    PI: 8.3439
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G223100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000425072123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C+++F++   L  H  +H
  Brast08G223100.1.p 50 FVCKTCDRVFPSFQALGGHRASH 72
                        89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.42E-848112No hitNo description
PfamPF139121.7E-124974IPR007087Zinc finger, C2H2
PROSITE profilePS501579.395077IPR007087Zinc finger, C2H2
SMARTSM003550.125072IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
PROSITE profilePS501578.55990117IPR007087Zinc finger, C2H2
SMARTSM003552.990112IPR015880Zinc finger, C2H2-like
PfamPF139127.7E-990114IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MMKRLFEEKE MARVLLLVSS RGSQAMPMPM PVPACGRGDR ALGAPAERAF VCKTCDRVFP  60
SFQALGGHRA SHKKPRLDGD GGDLAKPKLH GCSVCGLEFA VGQALGGHMR RHRAAAMASP  120
APENTKVEKH RVGVKRGLVW LDLNHPPCGG GGDDGDFGCG SDADGGECGR DMAAAAKLTF  180
HQFLDTGTMA VDCVGY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G223100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9683334e-69EU968333.1 Zea mays clone 319090 ZFP16-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569008.11e-116zinc finger protein ZAT12
SwissprotQ9SLD41e-22ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A0Q3R2P21e-115A0A0Q3R2P2_BRADI; Uncharacterized protein
STRINGBRADI2G37430.11e-115(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.12e-18C2H2 family protein