PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G222700.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 642aa MW: 71720.4 Da PI: 6.9116 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.1 | 2e-10 | 542 | 610 | 31 | 99 |
.--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 31 eesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 +es t+tle ++++W+ ++ +++++l+++W +F +n+++e D++vF ++ ++ +++v+++++ Brast08G222700.4.p 542 HESGTVTLEVpGKSEKWQPRF--FVEKDACMLAGNWLDFICDNQVQEEDICVFVPAKEeEKSKFMVHIISA 610 45669999995566*******..88888899***********************8877799999**99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.1E-12 | 504 | 610 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-12 | 504 | 609 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.86E-10 | 510 | 609 | No hit | No description |
PROSITE profile | PS50863 | 8.727 | 511 | 611 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-8 | 541 | 610 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence Send to blast |
MRGSRKGRRR PPGEWQRLRN ADDAAAASSL QAAAALASLH LPHPRPTASD CQDGELVGAE 60 GARGKRKGKR KWGFKAGKAG AVDSGRLPPG HFAHRRSTCR GGVGSIDEVL HGEVGIRSRF 120 SAARVRDIMR SLTPRQQGYV AKYGFEHLSR IGEFSVHEPL AEWIMGKINP PFSELRINMD 180 KTIVFSKPLV QKVLGVPAGG RPFVLHGQKT EKIKQLRTLY LNNSLRATIP HAVSLLKNNE 240 DEESFMRTFL LIVLAAVLTP TTGNTIDLDY LWAFEDMSAV QDLDWAGHIT EHLMEEVRKF 300 QFKSREEKMT DFWVGGCLPL LMIAYMDHLD LPRGRIVDRE INYSIPRICH VSKDDFQFTA 360 IADLNRQHYK FATFGILPFR DRTPYNDNPI IEETEVAEDD LHIPSKDYVI SGQWELEAHE 420 ERIYELGQGI QPEILAFAEA SIDNSLHGRN GVGSNQGEHS AQEYESSESD DHTTPPEADY 480 GVIFRNCLSG AQIEKVNTLI RKVQPGTVVF VATMRKCDVQ LPSPLLIVSK ERALAAAARF 540 PHESGTVTLE VPGKSEKWQP RFFVEKDACM LAGNWLDFIC DNQVQEEDIC VFVPAKEEEK 600 SKFMVHIISA EATRSRGVKR ARSSHDSPVV VDEQTANPGV V* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G222700.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010231769.1 | 0.0 | uncharacterized protein LOC100837372 | ||||
TrEMBL | I1HMC4 | 0.0 | I1HMC4_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G37387.1 | 0.0 | (Brachypodium distachyon) |
Link Out ? help Back to Top | |
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Phytozome | Brast08G222700.4.p |