PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G222700.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 466aa    MW: 51839.3 Da    PI: 5.0876
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G222700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.81.2e-103664343199
                         .--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  31 eesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         +es t+tle   ++++W+ ++     +++++l+++W +F  +n+++e D++vF   ++ ++ +++v+++++
  Brast08G222700.2.p 366 HESGTVTLEVpGKSEKWQPRF--FVEKDACMLAGNWLDFICDNQVQEEDICVFVPAKEeEKSKFMVHIISA 434
                         45669999995566*******..88888899***********************8877799999**99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.71E-12328433IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-12328434IPR015300DNA-binding pseudobarrel domain
CDDcd100175.49E-11334433No hitNo description
PROSITE profilePS508638.727335435IPR003340B3 DNA binding domain
PfamPF023621.7E-8365434IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MGNWLGQREH AESARGSGSG ASRPAKQARW TLVGCLLVIS LIAGRPAAVL TPTTGNTIDL  60
DYLWAFEDMS AVQDLDWAGH ITEHLMEEVR KFQFKSREEK MTDFWVGGCL PLLMIAYMDH  120
LDLPRGRIVD REINYSIPRI CHVSKDDFQF TAIADLNRQH YKFATFGILP FRDRTPYNDN  180
PIIEETEVAE DDLHIPSKDY VISGQWELEA HEERIYELGQ GIQPEILAFA EASIDNSLHG  240
RNGVGSNQGS KRFASCERGS SSHCRNTAKA AVTTPSSEES GEHSAQEYES SESDDHTTPP  300
EADYGVIFRN CLSGAQIEKV NTLIRKVQPG TVVFVATMRK CDVQLPSPLL IVSKERALAA  360
AARFPHESGT VTLEVPGKSE KWQPRFFVEK DACMLAGNWL DFICDNQVQE EDICVFVPAK  420
EEEKSKFMVH IISAEATRSR GVKRARSSHD SPVVVDEQTA NPGVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G222700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231769.10.0uncharacterized protein LOC100837372
TrEMBLA0A0Q3G8G10.0A0A0Q3G8G1_BRADI; Uncharacterized protein
STRINGBRADI2G37387.10.0(Brachypodium distachyon)