PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G222700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 674aa    MW: 75032 Da    PI: 7.1232
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G222700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.1e-105746423199
                         .--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  31 eesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         +es t+tle   ++++W+ ++     +++++l+++W +F  +n+++e D++vF   ++ ++ +++v+++++
  Brast08G222700.1.p 574 HESGTVTLEVpGKSEKWQPRF--FVEKDACMLAGNWLDFICDNQVQEEDICVFVPAKEeEKSKFMVHIISA 642
                         45669999995566*******..88888899***********************8877799999**99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-12536641IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-12536642IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-10542641No hitNo description
PROSITE profilePS508638.727543643IPR003340B3 DNA binding domain
PfamPF023623.0E-8573642IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MRGSRKGRRR PPGEWQRLRN ADDAAAASSL QAAAALASLH LPHPRPTASD CQDGELVGAE  60
GARGKRKGKR KWGFKAGKAG AVDSGRLPPG HFAHRRSTCR GGVGSIDEVL HGEVGIRSRF  120
SAARVRDIMR SLTPRQQGYV AKYGFEHLSR IGEFSVHEPL AEWIMGKINP PFSELRINMD  180
KTIVFSKPLV QKVLGVPAGG RPFVLHGQKT EKIKQLRTLY LNNSLRATIP HAVSLLKNNE  240
DEESFMRTFL LIVLAAVLTP TTGNTIDLDY LWAFEDMSAV QDLDWAGHIT EHLMEEVRKF  300
QFKSREEKMT DFWVGGCLPL LMIAYMDHLD LPRGRIVDRE INYSIPRICH VSKDDFQFTA  360
IADLNRQHYK FATFGILPFR DRTPYNDNPI IEETEVAEDD LHIPSKDYVI SGQWELEAHE  420
ERIYELGQGI QPEILAFAEA SIDNSLHGRN GVGSNQGSKR FASCERGSSS HCRNTAKAAV  480
TTPSSEESGE HSAQEYESSE SDDHTTPPEA DYGVIFRNCL SGAQIEKVNT LIRKVQPGTV  540
VFVATMRKCD VQLPSPLLIV SKERALAAAA RFPHESGTVT LEVPGKSEKW QPRFFVEKDA  600
CMLAGNWLDF ICDNQVQEED ICVFVPAKEE EKSKFMVHII SAEATRSRGV KRARSSHDSP  660
VVVDEQTANP GVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G222700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231769.10.0uncharacterized protein LOC100837372
TrEMBLI1HMC40.0I1HMC4_BRADI; Uncharacterized protein
STRINGBRADI2G37387.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP492169