PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G222600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 186aa MW: 20507.4 Da PI: 4.4081 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 2 | 42 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T+eE+ l+++++ q+G++ W++Iar+++ gRt++++k++w+++ Brast08G222600.2.p 2 TAEEERLILQLHSQWGSR-WSRIARRLP-GRTDNEIKNYWRTL 42 9*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.756 | 1 | 47 | IPR017930 | Myb domain |
CDD | cd00167 | 5.42E-9 | 1 | 39 | No hit | No description |
SMART | SM00717 | 6.0E-11 | 1 | 45 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 2 | 42 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.57E-13 | 2 | 53 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MTAEEERLIL QLHSQWGSRW SRIARRLPGR TDNEIKNYWR TLTRKLTKKT TTTATPETEK 60 KKDSSSPTAS DSSSSSASSS SSLTASAETG CGTEEEMGGG TEEAGETEEE TTAASEKKPE 120 KDMEMEELWN EIAAAEMAAA AASWPGLHAE ELLLPPSSPP AWEDYSLWRI DDQEYYSKME 180 HAALR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G222600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT829536 | 4e-41 | CT829536.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107P09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566622.1 | 8e-58 | transcription factor MYB59 | ||||
TrEMBL | I1HMC3 | 2e-56 | I1HMC3_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G37377.1 | 3e-57 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.1 | 7e-18 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Brast08G222600.2.p |