PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G222600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 29080.4 Da PI: 6.1805 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.4 | 9.3e-15 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv v++lG ++W+ a+ g++Rt+k+c++rw +yl Brast08G222600.1.p 18 KGPWTEQEDAQLVWFVRLLGERRWDFLAQVSGLRRTGKSCRLRWVNYL 65 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.4 | 6.9e-18 | 71 | 115 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE+ l+++++ q+G++ W++Iar+++ gRt++++k++w+++ Brast08G222600.1.p 71 RGRMTAEEERLILQLHSQWGSR-WSRIARRLP-GRTDNEIKNYWRTL 115 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.253 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.4E-27 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-12 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-13 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-19 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.35E-7 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 23.556 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-16 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 71 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-23 | 73 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.15E-9 | 73 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MRDNSSKSGG KTAMMKRKGP WTEQEDAQLV WFVRLLGERR WDFLAQVSGL RRTGKSCRLR 60 WVNYLHPGLK RGRMTAEEER LILQLHSQWG SRWSRIARRL PGRTDNEIKN YWRTLTRKLT 120 KKTTTTATPE TEKKKDSSSP TASDSSSSSA SSSSSLTASA ETGCGTEEEM GGGTEEAGET 180 EEETTAASEK KPEKDMEMEE LWNEIAAAEM AAAAASWPGL HAEELLLPPS SPPAWEDYSL 240 WRIDDQEYYS KMEHAALR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-25 | 18 | 118 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 6e-25 | 18 | 118 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-25 | 18 | 118 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-25 | 18 | 118 | 4 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 2e-25 | 18 | 118 | 4 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G222600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566622.1 | 1e-110 | transcription factor MYB59 | ||||
TrEMBL | I1HMC3 | 1e-109 | I1HMC3_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G37377.1 | 1e-109 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 1e-54 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Brast08G222600.1.p |