PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G202000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 234aa MW: 25189.4 Da PI: 9.928 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.3 | 7.2e-13 | 64 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ av +G + W+ Ia+ g +kqc++rw ++l Brast08G202000.1.p 64 KGTWTKEEDNILKAAVDVFGERKWAMIAKSYLPGWIGKQCRERWINHL 111 799*************************98777************996 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.6e-15 | 119 | 159 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+ Ed+ lvda++ G++ W+ Ia++++ gR+++++k+ w+ Brast08G202000.1.p 119 VWTEAEDLELVDAHRTCGNR-WSVIAKRLP-GRSENSVKNXWN 159 7*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.764 | 59 | 115 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.35E-26 | 61 | 158 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-12 | 63 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-11 | 64 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 65 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.01E-13 | 66 | 111 | No hit | No description |
SMART | SM00717 | 1.3E-11 | 116 | 164 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.532 | 116 | 166 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-18 | 118 | 161 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-13 | 119 | 159 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.27E-11 | 120 | 159 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGKYLSLGIS GLGGGDAGPN NSAAPANLGF GGGALPVAAM TALAPAPPVA PSAGSNLEDV 60 ERFKGTWTKE EDNILKAAVD VFGERKWAMI AKSYLPGWIG KQCRERWINH LHPNIKNDVW 120 TEAEDLELVD AHRTCGNRWS VIAKRLPGRS ENSVKNXWNA TRRGLRARRL LKKRSSKRQP 180 CPGRLSHLTH YISTLYPPPP STAAASLSPP LLPVQEHEDQ LQAQGGDGII CSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-32 | 61 | 163 | 1 | 102 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G202000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314583.1 | 1e-80 | transcription factor MYB73-like | ||||
Swissprot | Q9S7L2 | 4e-37 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A0A0Q3J3W1 | 3e-79 | A0A0Q3J3W1_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 5e-36 | myb domain protein 118 |
Link Out ? help Back to Top | |
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Phytozome | Brast08G202000.1.p |
Publications ? help Back to Top | |||
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