PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G201900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 252aa MW: 27340.7 Da PI: 8.8418 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.4e-16 | 83 | 129 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g WT+eEd +l+ av+++G + W+ Iar gR +kqc++rw ++l Brast08G201900.1.p 83 GTWTKEEDNILKAAVNEFGERKWAMIARSYLPGRIGKQCRERWINHL 129 79*************************98877************996 PP | |||||||
2 | Myb_DNA-binding | 39 | 1.9e-12 | 137 | 177 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+ Ed+ vda+++ + W+ Ia+ ++ gR+++++k++w+ Brast08G201900.1.p 137 VWTEAEDLEPVDAHRMCRNQ-WSVIAKQLP-GRSENSVKNHWN 177 7*****************99.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.43 | 77 | 133 | IPR017930 | Myb domain |
SMART | SM00717 | 8.3E-14 | 81 | 131 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.09E-26 | 81 | 176 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-14 | 83 | 129 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 83 | 134 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.63E-14 | 84 | 129 | No hit | No description |
PROSITE profile | PS51294 | 12.22 | 134 | 184 | IPR017930 | Myb domain |
SMART | SM00717 | 5.3E-8 | 134 | 182 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-14 | 135 | 179 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.3E-11 | 137 | 177 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-8 | 138 | 177 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MAVGHAFFMD REQEAAMDKV AMGKYLSLGI SGLGGGAAGP NNSAAPATYR FGGGALPVDA 60 MTAPAPPPPG APGAVEDVEQ FNGTWTKEED NILKAAVNEF GERKWAMIAR SYLPGRIGKQ 120 CRERWINHLH TNIKNDVWTE AEDLEPVDAH RMCRNQWSVI AKQLPGRSEN SVKNHWNATR 180 RGLRARRLLK KRSSKHQPCP GRLSHLAHYI STLXPPPPSA TAASLSPPLL PVQEHEDQLQ 240 AQDGDGIISS S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-30 | 83 | 179 | 8 | 103 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G201900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314583.1 | 6e-87 | transcription factor MYB73-like | ||||
Swissprot | Q9S7L2 | 9e-34 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A0A0Q3J3W1 | 1e-85 | A0A0Q3J3W1_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 5e-33 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Brast08G201900.1.p |
Publications ? help Back to Top | |||
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