PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G201700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 26467.9 Da PI: 10.0376 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 9.3e-16 | 85 | 132 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+e+d +l+ av+++G + W+ Ia+ gR kqc++rw ++l Brast08G201700.1.p 85 KGTWTEEDDNILIAAVNEFGERKWAMIAKSYLPGRIXKQCRERWINHL 132 799*************************98777************996 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.1e-17 | 138 | 180 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT+ Ed+ lvda+k G++ W+ Ia++++ gR+++++k++w+ Brast08G201700.1.p 138 KDVWTEAEDLELVDAHKTCGNR-WSVIAKRLP-GRSENSVKNHWN 180 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.266 | 80 | 136 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.45E-29 | 82 | 179 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 84 | 134 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-14 | 85 | 132 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-22 | 86 | 137 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.70E-14 | 87 | 132 | No hit | No description |
PROSITE profile | PS51294 | 17.928 | 137 | 187 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-15 | 137 | 185 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 138 | 180 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-20 | 138 | 182 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.63E-13 | 141 | 180 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MAAGHAFFMD LEQAAAMEKA AMGKYLSLAI PGHGGGVAGP NNSASPTTFG FGGGALPVAA 60 VTAPARAAPV VPGAGSNLED VERFKGTWTE EDDNILIAAV NEFGERKWAM IAKSYLPGRI 120 XKQCRERWIN HLHPNIKKDV WTEAEDLELV DAHKTCGNRW SVIAKRLPGR SENSVKNHWN 180 ATRRGLKARR LLKKRSSKRQ PCPGRLSHLA HYISTLYPPP PSAAAASLSP PLLPAQEHED 240 QLQA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-35 | 82 | 184 | 1 | 102 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G201700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314583.1 | 6e-92 | transcription factor MYB73-like | ||||
TrEMBL | A0A0Q3J3W1 | 1e-90 | A0A0Q3J3W1_BRADI; Uncharacterized protein | ||||
STRING | TRIUR3_11880-P1 | 1e-59 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 4e-39 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Brast08G201700.1.p |