PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G193800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 217aa MW: 24034.9 Da PI: 10.566 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.6 | 1.9e-15 | 35 | 79 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a +++G + Wk+I + + ++t q++s+ qk+ Brast08G193800.1.p 35 RERWTAEEHDRFLHALHLFGRD-WKRIEALVA-TKTSVQIRSHAQKF 79 78******************77.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.12E-16 | 29 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.483 | 30 | 84 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-10 | 34 | 82 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 9.8E-17 | 34 | 82 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.4E-8 | 35 | 75 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-12 | 35 | 78 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.10E-9 | 37 | 80 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MAAMFGGVRM PAAPSSSSLS GRKKLRKPYT ITRPRERWTA EEHDRFLHAL HLFGRDWKRI 60 EALVATKTSV QIRSHAQKFF LKAHKSGLAA GLPPPLHPRR RSPALLLQQP GNADMQVPSM 120 EECHRARASP GCLCPDIDRP WLDKDGSPIV ATGLPLSPAD LRFAQVYRFV GDFFGADDAR 180 VPVEARLWSL QLQGMDPLVL GTILIVLSNL QENLFA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G193800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK359577 | 1e-59 | AK359577.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1099F17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566512.2 | 1e-120 | protein REVEILLE 6 | ||||
TrEMBL | A0A2K2DBT5 | 1e-113 | A0A2K2DBT5_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G34670.1 | 1e-120 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3642 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01280.1 | 9e-24 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast08G193800.1.p |