PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G171300.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 266aa    MW: 30298.1 Da    PI: 9.1043
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G171300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.71.2e-314292151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Brast08G171300.2.p 42 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 92
                        79***********************************************95 PP
2K-box100.22.8e-331102064100
               K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                         s++   ++e +a+++qqe+akL+ +i nLq+++R l+Ge++ ++s ++L+qLe +L+k+l kiR++Knell+++ie++q++e elq++n +
  Brast08G171300.2.p 110 SNT-GtVAEINAQHYQQESAKLRHQITNLQNSNRTLIGESMATMSQRDLKQLEGRLDKGLGKIRARKNELLCAEIEYMQRREMELQNDNLY 199
                         333.349999********************************************************************************* PP

               K-box  94 Lrkklee 100
                         Lr+k++e
  Brast08G171300.2.p 200 LRSKVAE 206
                         ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.8E-423493IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.883494IPR002100Transcription factor, MADS-box
CDDcd002652.00E-4435108No hitNo description
SuperFamilySSF554557.46E-3335107IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-323656IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003690IPR002100Transcription factor, MADS-box
PfamPF003191.0E-264390IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-325671IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-327192IPR002100Transcription factor, MADS-box
PfamPF014865.9E-25119204IPR002487Transcription factor, K-box
PROSITE profilePS5129714.214120210IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MQILKEQLAT PSTCLMESES PGSGSGSAGA AEKMGRGRIE IKRIENTTNR QVTFCKRRNG  60
LLKKAYELSV LCDAEVALIV FSSRGRLYEY SNNSVKATIE RYKKATSDTS NTGTVAEINA  120
QHYQQESAKL RHQITNLQNS NRTLIGESMA TMSQRDLKQL EGRLDKGLGK IRARKNELLC  180
AEIEYMQRRE MELQNDNLYL RSKVAENERG QQQTLNMMGA ASTSDQYDQN MIHCDPRNFL  240
QFNIMQQPQY YQQQEDRKAF NSVER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-2034102169Myocyte-specific enhancer factor 2B
1tqe_Q4e-2034102169Myocyte-specific enhancer factor 2B
1tqe_R4e-2034102169Myocyte-specific enhancer factor 2B
1tqe_S4e-2034102169Myocyte-specific enhancer factor 2B
6c9l_A4e-2034102169Myocyte-specific enhancer factor 2B
6c9l_B4e-2034102169Myocyte-specific enhancer factor 2B
6c9l_C4e-2034102169Myocyte-specific enhancer factor 2B
6c9l_D4e-2034102169Myocyte-specific enhancer factor 2B
6c9l_E4e-2034102169Myocyte-specific enhancer factor 2B
6c9l_F4e-2034102169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G171300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693130.0KF469313.1 Brachypodium distachyon MADS-box transcription factor 18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288321.11e-173MADS-box transcription factor 58-like
SwissprotQ2V0P11e-146MAD58_ORYSJ; MADS-box transcription factor 58
TrEMBLI1HKZ21e-172I1HKZ2_BRADI; MADS-box transcription factor 18
STRINGBRADI2G32910.11e-172(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-100MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]
  4. Sato H,Yoshida K,Mitsuda N,Ohme-Takagi M,Takamizo T
    Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58.
    Plant Sci., 2012. 183: p. 183-9
    [PMID:22195592]
  5. Yun D, et al.
    OsMADS16 genetically interacts with OsMADS3 and OsMADS58 in specifying floral patterning in rice.
    Mol Plant, 2013. 6(3): p. 743-56
    [PMID:23300256]
  6. Yan D, et al.
    Curved chimeric palea 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.
    Plant J., 2015. 82(1): p. 12-24
    [PMID:25647350]
  7. Zheng M, et al.
    DEFORMED FLORAL ORGAN1 (DFO1) regulates floral organ identity by epigenetically repressing the expression of OsMADS58 in rice (Oryza sativa).
    New Phytol., 2015. 206(4): p. 1476-90
    [PMID:25675970]
  8. Chen R, et al.
    A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58.
    Mol Plant, 2015. 8(7): p. 1069-89
    [PMID:25684654]
  9. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]