PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G160900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 269aa MW: 28831.3 Da PI: 8.6703 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.5 | 1.8e-19 | 11 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell av ++G ++W+ I+ +++ gR++k+c++rw + Brast08G160900.1.p 11 KGSWSPEEDELLRAAVSRHGARNWSVISGEVP-GRSGKSCRLRWCNQ 56 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.7e-18 | 63 | 107 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eEd ++v+a+++ G++ W++Iar++ gRt++++k++w++ Brast08G160900.1.p 63 RRAFTPEEDAIIVQAHNECGNK-WAAIARRLV-GRTDNSVKNHWNST 107 678*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.284 | 6 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-30 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-16 | 10 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-18 | 11 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 12 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.55E-16 | 13 | 55 | No hit | No description |
PROSITE profile | PS51294 | 21.13 | 62 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 7.5E-16 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 63 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 65 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.21E-13 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MVPSTGAGRV KGSWSPEEDE LLRAAVSRHG ARNWSVISGE VPGRSGKSCR LRWCNQLSPG 60 VHRRAFTPEE DAIIVQAHNE CGNKWAAIAR RLVGRTDNSV KNHWNSTLRR NRRAAAAAAA 120 AGNAVLFAPV SMSSFQSLNL TEEEDDDDSD NNSPPTKRQC VGIAPLAVKL QEEAPPDPPT 180 SLSLSLPGVG SSTAPELVSE RAKLEQNPWL KAAMQQMVAE EVHRHMGSVY TALMASLDSG 240 GAANPPKARI DRAAAASRDQ KADGRMDR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-34 | 10 | 110 | 3 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 5e-34 | 10 | 110 | 3 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G160900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC136221 | 1e-82 | AC136221.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0077J17, complete sequence. | |||
GenBank | AP014961 | 1e-82 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 1e-82 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566355.1 | 1e-121 | transcription factor MYB77 | ||||
Swissprot | Q9SN12 | 3e-47 | MYB77_ARATH; Transcription factor MYB77 | ||||
TrEMBL | I1HKE6 | 1e-119 | I1HKE6_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G28910.1 | 1e-120 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 2e-47 | myb domain protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Brast08G160900.1.p |
Publications ? help Back to Top | |||
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