PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G116600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 359aa MW: 39015.5 Da PI: 6.7495 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.4 | 2.9e-49 | 42 | 167 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +pGfrFhPt+eel+ +yL++kveg+++++ e i+ +d+y+++Pw+Lp+++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + Brast08G116600.1.p 42 MPGFRFHPTEEELIEFYLRRKVEGRRFNV-ELITFLDLYRFDPWELPAMAVIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMI 131 79***************************.89***************7777899************************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ +glkktLvfy+g+apkg++++W+m+eyrl Brast08G116600.1.p 132 RGENSRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 167 **********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 54.885 | 41 | 190 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-57 | 41 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-24 | 43 | 167 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MSRDIDEGSV PGAVAAGGGG ELEGGEPVAA GGEDSHENDL VMPGFRFHPT EEELIEFYLR 60 RKVEGRRFNV ELITFLDLYR FDPWELPAMA VIGEKEWFFY VPRDRKYRNG DRPNRVTASG 120 YWKATGADRM IRGENSRPIG LKKTLVFYSG KAPKGVRSSW IMNEYRLPPP TTDADLFYKS 180 EISLCRVYKR SGIDDGGHGR ASSSSNVQST SPMPGPSRTS APITGRQHGP SLTQQPTSFH 240 HLIVQAESST RVPPLATVDV QATARSAYAM ADAPVIGSSS TPVDDELSRL VGHGQQAYGA 300 IANHQDAGTH FFPMPPPPAP HPLGALPMSP AHAAGSDKLW DWNPDTTASK DYGSSSYK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-55 | 43 | 191 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-55 | 43 | 191 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-55 | 43 | 191 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-55 | 43 | 191 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-55 | 43 | 191 | 22 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-55 | 43 | 191 | 22 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-55 | 43 | 191 | 22 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-55 | 43 | 191 | 22 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-55 | 43 | 191 | 22 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-55 | 43 | 191 | 22 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-55 | 43 | 191 | 22 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-55 | 43 | 191 | 22 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-55 | 43 | 191 | 19 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-55 | 43 | 191 | 19 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G116600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102902 | 1e-171 | AK102902.1 Oryza sativa Japonica Group cDNA clone:J033113D13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010231368.1 | 0.0 | NAC domain-containing protein 22 isoform X2 | ||||
TrEMBL | I1HJC4 | 0.0 | I1HJC4_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G25150.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 7e-98 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Brast08G116600.1.p |