PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G105300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 28555.9 Da PI: 7.0088 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 133 | 2.1e-41 | 4 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppG+rF Pt+eelv +yL++k++g + ++e+vi+ +d+++++Pw+Lp+ ++++ + w++F+ r+ ++a+g r++r+t sgyWka Brast08G105300.1.p 4 LPPGYRFYPTEEELVRFYLRQKLDGGHraRDIERVIPVADVCSLDPWQLPEahrGAAGGGEPWFYFCARQDREARGGRPSRTTPSGYWKAA 94 79**********************99977778889**************9534444447789***************************** PP NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ v+ + +g+ +g+kkt+vfy+grap g+kt+W m+eyr+ Brast08G105300.1.p 95 GTPGLVYPAepNGRPIGTKKTMVFYTGRAPAGTKTKWKMNEYRA 138 ******988889999***************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-50 | 3 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.512 | 4 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-23 | 5 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGELPPGYRF YPTEEELVRF YLRQKLDGGH RARDIERVIP VADVCSLDPW QLPEAHRGAA 60 GGGEPWFYFC ARQDREARGG RPSRTTPSGY WKAAGTPGLV YPAEPNGRPI GTKKTMVFYT 120 GRAPAGTKTK WKMNEYRALD HDAPAALQPR SEFSLCRLYT KSGCPRQFDR RPCTGRGAAE 180 DPVSSFAAGA ELANEDDEVV LGRGQKRKRR APNHDTSSSS AACFMQQRQT HGGPDEEEEE 240 LVDSMIDWAE FLDWI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-32 | 4 | 167 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-32 | 4 | 167 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-32 | 4 | 167 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-32 | 4 | 167 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-32 | 4 | 167 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-32 | 4 | 167 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-32 | 4 | 167 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-32 | 4 | 167 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-32 | 4 | 167 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-32 | 4 | 167 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-32 | 4 | 167 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-32 | 4 | 167 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-32 | 4 | 167 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-32 | 4 | 167 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G105300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP099084 | 1e-121 | FP099084.1 Phyllostachys edulis cDNA clone: bphyem111h11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003568356.1 | 1e-150 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 4e-60 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | I1HIZ6 | 1e-148 | I1HIZ6_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G23967.1 | 1e-149 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-62 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Brast08G105300.1.p |
Publications ? help Back to Top | |||
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