PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G104100.6.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 471aa    MW: 52439.1 Da    PI: 6.2792
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G104100.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.71.8e-11162190533
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                         k err+++NReAAr+sR+RKka++++Le+
  Brast08G104100.6.p 162 KTERRLAQNREAARKSRLRKKAYVQQLET 190
                         88*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-7157204No hitNo description
SMARTSM003389.5E-5158217IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.22160204IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.59E-7162203No hitNo description
PfamPF001708.3E-9162190IPR004827Basic-leucine zipper domain
PROSITE patternPS000360165180IPR004827Basic-leucine zipper domain
PfamPF141443.2E-27243317IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MPKAWILELQ PAAAAYFGEL GEALIHGTCA GVNPVMIEGD AHTKSAYLAA RPPTLEIFPS  60
WPMNHLQQPY SANSQSVGST DSSSAQNTMS QAELVSPVSM RTDSGQQQEV LMVTIDDYNY  120
NQGLGPAAAA TVTAPSFQQH AGGQDKRKHG STRKDDKLLD PKTERRLAQN REAARKSRLR  180
KKAYVQQLET GRIRLQQIEQ ELQRGRSQGL LTGGCSAPGD MSPGAVMFDM EYARWLDEDS  240
KYMIELQSAL QAQILDGNLG TIVEECLRHY DELFHLRGVL ARSDVFHLMT GMWATQSERC  300
FLWMAGFRPS EILKMLTPQL DPLTEQQLLG MFNLQQSSEQ AEEALAQGLH QLHQSLADAV  360
GAGPLNDGAD VANYTSLMAL ALDRLDNLES FYREADNLRR QTLHRMRQIL TTRQTARCFL  420
SIGEYHRHLR ALSSIWAARP RENFIMGENV SSTGTEFQVH QSQQNQFSGL *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G104100.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755266.10.0transcription factor TGAL5 isoform X11
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLA0A2K2DA630.0A0A2K2DA63_BRADI; Uncharacterized protein
STRINGBRADI2G23890.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-135bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]