PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G104000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 358aa MW: 39479.7 Da PI: 7.3497 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 2e-05 | 190 | 209 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ Brast08G104000.1.p 190 FACHVCSKTFNRYNNMQMHM 209 78*****************9 PP | |||||||
2 | zf-C2H2 | 13.6 | 0.0002 | 276 | 298 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk+F k + ++H +++ Brast08G104000.1.p 276 FACRRCGKPFAVKGDWRTHEKNC 298 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.39E-5 | 186 | 213 | No hit | No description |
PROSITE profile | PS50157 | 10.346 | 190 | 217 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.7E-5 | 190 | 209 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 192 | 212 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50868 | 8.217 | 234 | 250 | IPR003616 | Post-SET domain |
SuperFamily | SSF57667 | 3.12E-6 | 260 | 296 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.4E-6 | 262 | 296 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MVLRAACAME GRGGVRYFEW LKPASSPSTT PSTDHLQAVP GRGEHRSATM LCLPLLGRLG 60 AGEKRSPEIK PSVKEEASNI TEDDGADLNI GLPASGGYSS EELPAMAVDE EEDEETEEEE 120 LEEEEKPRHE IEMHKVELAA GVHSEMMVEG PPELCVGGEE ESSNGGVTPC RDRPYWIPTP 180 AQILIGAVQF ACHVCSKTFN RYNNMQMHMW GHGREYRKGP ESLKGTHATT LALLRLPCYC 240 CAPGCRNSVG HPRARPLKDF RTLQTHYRRK HGAKPFACRR CGKPFAVKGD WRTHEKNCGK 300 RWLCACGSDF KHKRSLNDHA RSFGAGHFHV SVAPLAAAAE AQGQPKERVI RFGQQCI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G104000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102658 | 1e-160 | AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566203.1 | 0.0 | protein TRANSPARENT TESTA 1 | ||||
Swissprot | Q9SGD1 | 5e-95 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | A0A0Q3IJL9 | 0.0 | A0A0Q3IJL9_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G23870.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4472 | 36 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 2e-92 | WIP domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Brast08G104000.1.p |
Publications ? help Back to Top | |||
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