PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G101400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 699aa    MW: 79896.5 Da    PI: 9.4424
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G101400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.52.9e-20131224291
                FAR1   2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                         fYn+YA+ vGFs +k+ +++s      + t++ ++C+++gk   ++      +k r++++ + t+C+a+++v+++  +kw vt++e +HnH
  Brast08G101400.1.p 131 FYNTYASIVGFSAKKAGTYHSxgAAVSKATRYXYRCNRSGKIVGKEACpaqIKKPRNNNTIEITDCHARMVVTLK-GEKWIVTSIEMQHNH 220
                         9********************877778899**********98776655555788899999***************.9************** PP

                FAR1  88 elap 91 
                         +l+p
  Brast08G101400.1.p 221 ALSP 224
                         *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.6E-19131224IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MFMITGRDDR SDYTKETYEH DIDQEETLYD HVDCDSADDN AETHDVSIAS KTLSGVTHRA  60
EQLDHGXTHR FENQQMAENG ATVEHLSTED IENYLQNEXV IASQTCSQEL RGQHVPHIDM  120
CFSSEAEAFA FYNTYASIVG FSAKKAGTYH SXGAAVSKAT RYXYRCNRSG KIVGKEACPA  180
QIKKPRNNNT IEITDCHARM VVTLKGEKWI VTSIEMQHNH ALSPPGESKF LRSHKNMTDE  240
EKGGISSLPY XKKDVSNYRT AIRNENNQND MMMVIDFFRK RQMQDPRFYY AFRVDNENKH  300
RNCLFHIKKK AEEKCARCFA AKPTLHIEFN DVINKCQTED EFETLWPTMM KKYKVENIKY  360
FQHMWVIRKN FVLVYFKKDF FPFIHSTARS EGTNAILKDN VGSTYSIISF LDGILCCHAL  420
KVLLHLNVSV LPEKYYIQRW RPIERKDIRD MQCNVPLELT AESSHFRYNV LSKHMIDLAA  480
DASKLKETYL YLLNKSKKIG RKICEMRKET DNRDGLNQTE QPAQNNIPTK HTSENIYKEP  540
DVAKSKGRPK LPGRQKSLVE EIFTKQQITC RHCGGHDHNI KTCKKLAISK ETLQKKKTAG  600
RKTKAGVPTA AAQQAPKRPR TAATTTNTTV STVSPVQGAV KKTTTNKNFK DAIATVERGA  660
SCPSPPRDIQ SSRVRTPTQK AVENMLLTPT RKQRKQDV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G101400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317768.11e-129protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0Q3L6791e-125A0A0Q3L679_BRADI; Uncharacterized protein
TrEMBLA0A2K2CX721e-128A0A2K2CX72_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1533535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-15FAR1-related sequence 5