PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G101100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 302aa    MW: 32676.6 Da    PI: 6.6787
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G101100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271.1e-083275344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        +W++eE +l+ +a ++  g+   +W+++a+ ++ g++  ++  ++
  Brast08G101100.1.p 32 AWSPEENKLFEEALARVDGDapgRWERVAALLP-GKSVADVMAHY 75
                        7********************************.********999 PP
2Myb_DNA-binding45.71.5e-14146190347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky
  Brast08G101100.1.p 146 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 190
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.2132882IPR017884SANT domain
SMARTSM007171.5E-62981IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-43176IPR009057Homeodomain-like
SuperFamilySSF466892.01E-93184IPR009057Homeodomain-like
CDDcd001677.76E-73275No hitNo description
PfamPF002493.1E-73275IPR001005SANT/Myb domain
PROSITE profilePS5129417.568139195IPR017930Myb domain
SuperFamilySSF466891.35E-17141195IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-17142193IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.0E-12143189IPR009057Homeodomain-like
SMARTSM007175.8E-13143193IPR001005SANT/Myb domain
CDDcd001671.83E-11146191No hitNo description
PfamPF002496.9E-12146190IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MMREPWMEVL PLPPAAYLAG GWFLQDGGAG RAWSPEENKL FEEALARVDG DAPGRWERVA  60
ALLPGKSVAD VMAHYDDLEN DVGFIEAGLV PFPHYNGGSP ASGFTLDWDA GGGGDDAGGL  120
AFKRSCYIVG GKRARGPDQE RKKGVPWTEE EHKLFLMGLK KYGRGDWRNI SRNFVTSRTP  180
TQVASHAQKY FIRLNSGGKD KRRSSIHDIT TVNIPDDDHS NPSPSPPSVL TPNSSCAAAP  240
AISEQFGVLV DSKQQIGRGG HHFVPHLYGN VKLEAGNGYH GGRLDDSVLM QMQCGQLQPL  300
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-162895673RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G101100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0947400.0FP094740.1 Phyllostachys edulis cDNA clone: bphylf046m24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568340.10.0transcription factor DIVARICATA
SwissprotQ8S9H73e-83DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLI1HIW60.0I1HIW6_BRADI; Uncharacterized protein
STRINGBRADI2G23710.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.18e-77Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]