PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G097000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 567aa MW: 61860.8 Da PI: 9.6161 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.7e-17 | 58 | 104 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +l +av + g++Wk+Ia+ ++ Rt+ qc +rwqk+l Brast08G097000.1.p 58 RGGWTPEEDAKLRKAVSAFEGKNWKKIAESFP-DRTEAQCLHRWQKVL 104 789*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 37.2 | 6.9e-12 | 116 | 151 | 10 | 46 |
HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 e ++d vk++G++ W+ Ia+ + gR +kqc++rw++ Brast08G097000.1.p 116 ETIIDMVKEHGPRKWSDIAKSLR-GRIGKQCRERWHN 151 789********************.***********98 PP | |||||||
3 | Myb_DNA-binding | 57.6 | 2.9e-18 | 159 | 201 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g+WT eE+ lv+a++++G++ W+ Ia+ ++ gRt++ +k++w+ Brast08G097000.1.p 159 KGSWTVEEERVLVNAHRLHGNK-WADIAKLLP-GRTDNAVKNHWN 201 799*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.416 | 53 | 108 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.31E-16 | 56 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.0E-15 | 57 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 58 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-19 | 60 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-13 | 61 | 104 | No hit | No description |
PROSITE profile | PS51294 | 10.38 | 109 | 153 | IPR017930 | Myb domain |
SMART | SM00717 | 5.7E-7 | 109 | 155 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.16E-9 | 116 | 153 | No hit | No description |
Pfam | PF00249 | 4.4E-10 | 116 | 151 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-19 | 117 | 160 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.3E-27 | 133 | 215 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.324 | 154 | 208 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-16 | 158 | 206 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-16 | 159 | 202 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-23 | 161 | 209 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.77E-13 | 161 | 201 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MVALEERNGN GGTGWVLALP ASEGGSYGRH ARTSQVLSIP AYSISGRRQT SGAVRRPRGG 60 WTPEEDAKLR KAVSAFEGKN WKKIAESFPD RTEAQCLHRW QKVLDPELLK GPCTKETIID 120 MVKEHGPRKW SDIAKSLRGR IGKQCRERWH NSLNPQLRKG SWTVEEERVL VNAHRLHGNK 180 WADIAKLLPG RTDNAVKNHW NSSVRKRLKH HNRSVTHNDL KHAANRPPAE NHIDLNKEPS 240 INLQDCSVVV DHSHPTKRLS NFLSHSMPVA QPVTLCEASV ADDSAVALAL MGLKMDSGSD 300 QDKGLKLVSE KGLEINLPNE KGPEIDFITD KMGPSGLAKP GETANAGCES PSQNEARPFG 360 SLRYQIPMLH DTGLAHSPVF STHHGVAIQS PIGHTTPSPT HGKKSDLLSV DSILKSAAEN 420 FPGTPSILRS KRKRPAPAQD CELRIDINSG SFDTTMKNFN AYGPNSLKNS TSLSDVLGKS 480 DVSPSSRPRS KSMAILKTIE KHLDFSSDAM DISDTSGVSK PACPSSEIIN SSTDISRVLD 540 KKMGGHMVGL ETSTDDFVHT TKLDAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 8e-62 | 61 | 208 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 8e-62 | 61 | 208 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G097000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003568309.1 | 0.0 | transcription factor MYB3R-2 isoform X2 | ||||
Swissprot | Q0JHU7 | 1e-155 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | A0A0Q3IJE6 | 0.0 | A0A0Q3IJE6_BRADI; Uncharacterized protein | ||||
STRING | Traes_1BL_C25B5DDB4.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 8e-83 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | Brast08G097000.1.p |
Publications ? help Back to Top | |||
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