PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G096700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 612aa    MW: 67825.3 Da    PI: 7.1529
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G096700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-1763109148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT+eEde l +av  + g++Wk+Ia+ ++  Rt+ qc +rwqk+l
  Brast08G096700.1.p  63 KGGWTPEEDETLRKAVYAFKGKNWKKIAESFP-DRTEVQCLHRWQKVL 109
                         688*****************************.************986 PP
2Myb_DNA-binding60.63.4e-19115161148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd+ ++d vk++G++ W++Ia+ +  gR +kqc++rw+++l
  Brast08G096700.1.p 115 KGPWTQEEDDTIIDMVKKHGPRKWSLIAKSLD-GRIGKQCRERWHNHL 161
                         79******************************.*************97 PP
3Myb_DNA-binding60.63.3e-19167209145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         + +WTteE+  lv+a++ +G++ W+ Ia+ ++ gRt++++k++w+
  Brast08G096700.1.p 167 KEAWTTEEEHVLVEAHHVHGNR-WAEIAKLLP-GRTDNSIKNHWN 209
                         579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.71158109IPR017930Myb domain
SuperFamilySSF466891.15E-1861123IPR009057Homeodomain-like
SMARTSM007171.1E-1462111IPR001005SANT/Myb domain
PfamPF002492.0E-1563109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2365121IPR009057Homeodomain-like
CDDcd001673.31E-1366109No hitNo description
PROSITE profilePS5129431.632110165IPR017930Myb domain
SuperFamilySSF466893.03E-31112208IPR009057Homeodomain-like
SMARTSM007173.9E-17114163IPR001005SANT/Myb domain
PfamPF002491.3E-17115161IPR001005SANT/Myb domain
CDDcd001672.02E-15117161No hitNo description
Gene3DG3DSA:1.10.10.601.1E-26122168IPR009057Homeodomain-like
PROSITE profilePS5129422.465166216IPR017930Myb domain
SMARTSM007171.8E-15166214IPR001005SANT/Myb domain
PfamPF002496.4E-17167210IPR001005SANT/Myb domain
CDDcd001671.91E-12169209No hitNo description
Gene3DG3DSA:1.10.10.606.8E-23169215IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MCEMKVEERR GCTESRQHLE LSSPSASEGG SYGGYARMSP AVSSPADSIS GRRRTSGPVR  60
RAKGGWTPEE DETLRKAVYA FKGKNWKKIA ESFPDRTEVQ CLHRWQKVLD PELIKGPWTQ  120
EEDDTIIDMV KKHGPRKWSL IAKSLDGRIG KQCRERWHNH LDPQIRKEAW TTEEEHVLVE  180
AHHVHGNRWA EIAKLLPGRT DNSIKNHWNS SVRKRVDDYS TRAVMPVPLH ATHIDLKHAA  240
KLPSAENHID LNKEPSISLK DRPVIVDHSD PIQSPRVCSL KNIKGCSDFL SLSMPTAQPL  300
TLCEASVSDD SAVALAIMGL KMDSGHGKDI ELKFVSEKGL EINLSNEKGP EIDLITNKMG  360
PSGLGKSEGE IANIGCESPS QNEAGSFGSL CYRIPMPDDT DLAHSPVFST HHVREHCGIG  420
FQSPTGYSTP SPTDGKKSDQ LSVESILKSA AENFPSTPSI LRRRKREKPT PAQDCELRID  480
TNSDSFETPI GNFSTDSPHS FKTATFLSFG HLDDQRLSAA LGKFDVSPSY RLRSKRMAVL  540
KTIEKHLDFS SDSTDICDTA GVLKSACRNS EDIISSTDIS SLEDKKMGRE HIIGLETLTS  600
DFAHRRKLDP T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-69622165159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-69622165159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1461468RRRKREKP
2462467RRKREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G096700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568309.10.0transcription factor MYB3R-2 isoform X2
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A0Q3K5700.0A0A0Q3K570_BRADI; Uncharacterized protein
STRINGTraes_1BL_C25B5DDB4.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-91myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]