PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G096600.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 562aa    MW: 62626.7 Da    PI: 7.3689
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G096600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-171965148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEde l +av  + g++Wk+Ia+ ++  Rt+ qc +rwqk+l
  Brast08G096600.2.p 19 KGGWTPEEDETLRKAVYAFKGKNWKKIAESFP-DRTEVQCLHRWQKVL 65
                        688*****************************.************986 PP
2Myb_DNA-binding59.85.8e-1971117148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd+ ++d vk++G++ W+ Ia+ +  gR +kqc++rw+++l
  Brast08G096600.2.p  71 KGPWTQEEDDTIIDMVKKHGPRKWSQIAKSLD-GRIGKQCRERWHNHL 117
                         79******************************.*************97 PP
3Myb_DNA-binding59.95.7e-19123165145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         + +WTteE++ lv+a+++ G++ W+ Ia+ ++ gRt++++k++w+
  Brast08G096600.2.p 123 KEAWTTEEEQVLVKAHHLNGNK-WAEIAKLLP-GRTDNSIKNHWN 165
                         579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.7111465IPR017930Myb domain
SMARTSM007171.1E-141867IPR001005SANT/Myb domain
PfamPF002491.8E-151965IPR001005SANT/Myb domain
SuperFamilySSF466891.65E-152075IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-232177IPR009057Homeodomain-like
CDDcd001674.51E-132265No hitNo description
PROSITE profilePS5129431.5466121IPR017930Myb domain
SuperFamilySSF466895.24E-3168164IPR009057Homeodomain-like
SMARTSM007173.9E-1770119IPR001005SANT/Myb domain
PfamPF002492.3E-1771117IPR001005SANT/Myb domain
CDDcd001673.52E-1573117No hitNo description
Gene3DG3DSA:1.10.10.608.5E-2778124IPR009057Homeodomain-like
SMARTSM007175.9E-16122170IPR001005SANT/Myb domain
PROSITE profilePS5129422.675122172IPR017930Myb domain
PfamPF002498.6E-17123166IPR001005SANT/Myb domain
CDDcd001671.72E-12125165No hitNo description
Gene3DG3DSA:1.10.10.601.5E-22125172IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MARLFAWERR TSGPVRRAKG GWTPEEDETL RKAVYAFKGK NWKKIAESFP DRTEVQCLHR  60
WQKVLDPELI KGPWTQEEDD TIIDMVKKHG PRKWSQIAKS LDGRIGKQCR ERWHNHLDPQ  120
IRKEAWTTEE EQVLVKAHHL NGNKWAEIAK LLPGRTDNSI KNHWNSSVRK RLEDYNTRAG  180
MPIPQHAIHN DSKHAAKLPS VDNHIDLNKE QSISLKDDLV IVDHSDPIKS PPVCSFKNIK  240
GCSGFLSLSI PSAQPVTLCE TSVSDDSAVA FGIMGLKMDS GHDKDMELNF VSEKGLEINL  300
SNEKSSEIHL ITNKMGPSGL AKSEGERANI VCESPSQNGA RSFGSLCYPI PMLDDTDLAH  360
SPVFSAHHLR EHCGIGFQSP TGYTTPSPTD GKKSNHLSVE SILKSAAENF PSTPSILRRR  420
KREKPTPTQD CELRIDTNSD SFETPIGNFT TDSPHSFKTA TLLSSGHLDD KLPAALGKFD  480
VSPLYRLKSK RMAVLKTIEK HLDFSSDAMD IYDSAGVLKS ACMSSESINF STDNSSVQDK  540
KMGDQMIGLE TLANDFLHKD S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-68181725159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-68181725159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1417424RRRKREKP
2418423RRKREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G096600.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3635121e-153AK363512.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016D03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568308.10.0transcription factor MYB3R-2
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A0Q3G3R20.0A0A0Q3G3R2_BRADI; Uncharacterized protein
STRINGBRADI2G23310.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-97myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]