PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G095000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 173aa MW: 18346.2 Da PI: 8.1697 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.001 | 91 | 113 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg F+ L H+r+H Brast08G095000.1.p 91 HECAVCGLEFPMGQALGGHMRRH 113 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.3E-8 | 43 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.512 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.88 | 44 | 66 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.54E-6 | 44 | 113 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.0E-10 | 91 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.492 | 91 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.77 | 91 | 113 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 93 | 113 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MTLAQEPQTA AEGRAQVLSP GSSGSWRSSS PGAGSARRED SGAFECRTCG RRFPSFQALG 60 GHRTGHTRRH TLLPAASTQN KASPSHRAPQ HECAVCGLEF PMGQALGGHM RRHRLQEPAD 120 RHASRGGVEE EDTLDLNRSA PKEKGQDCPH EEGCSSSSGG SDSLPRLLNL LV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G095000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003568294.1 | 1e-50 | zinc finger protein ZAT8 | ||||
TrEMBL | A0A0Q3IZS6 | 3e-49 | A0A0Q3IZS6_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G23160.1 | 4e-50 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46090.1 | 2e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast08G095000.1.p |