PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G091300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 430aa    MW: 46012.2 Da    PI: 4.9027
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G091300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.3e-13197248155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e+I++L+
  Brast08G091300.1.p 197 QRMTHIAVERNRRRQMNDYLRVLRSLMPGS---YVQRGDQASIIGGAIEFIRELE 248
                         79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-13195251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-14195252No hitNo description
SuperFamilySSF474591.06E-16196262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.859196247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-11197248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9202253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.811355429IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEKQQQQLDR FAPLDGAAPE DPIIGGAAGA EMVDYMLGQQ TPPPPPPPGA PPHGLQGHAS  60
SFDKLSFSDV LHFADFGPRL ALNQPSLPAH HDEGGDDDDD EDNYFFRQFH PSLPAADDPT  120
SQHAAVTAQG SGGDHGTTAG GGGVSESTTT LVQQQQESVG GGKQGGTGAA AGGAGNNKSG  180
RRKRPRSTKT SEEVESQRMT HIAVERNRRR QMNDYLRVLR SLMPGSYVQR GDQASIIGGA  240
IEFIRELEQL IQCLESQKRR RLYGDAPRPP AAPDISTAGP PVPPATSTAM QQQQDAPAPF  300
YVVPPPSIPF PATTDDGVNN KAMDELEGGL GREEVAENKS CLADIEVRVL GADAVVKVLS  360
RRRPEQLIKT IAVLEEMHLS ILHTNITTID QTVLYSFNVK IAGEPRFTAE DIAGAVHQIL  420
SFIDINYTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197208RMTHIAVERNRR
2257261KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:17088607, PubMed:17183265, PubMed:17183267). Together with MYB88 and MYB124, ensures that stomata contain just two guard cells (GCs) by enforcing a single symmetric precursor cell division before stomatal maturity (PubMed:24571519). Together with SPCH and MUTE, regulates the stomata formation. Required to promote differentiation and morphogenesis of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Mediates the formation of stomata (PubMed:17088607, PubMed:17183265, PubMed:17183267). Prevents histone H3K27me3 marks and derepresses stem cell gene expression (PubMed:24654956). {ECO:0000269|PubMed:17088607, ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267, ECO:0000269|PubMed:24571519, ECO:0000269|PubMed:24654956}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G091300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Inhibited by low relative humidity (LRH) via epigenetic CG methylation, thus leading to a reduced stomatal index. {ECO:0000269|PubMed:22442411}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2521091e-114AK252109.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf148l20, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231276.10.0transcription factor FAMA
SwissprotQ56YJ81e-110FAMA_ARATH; Transcription factor FAMA
TrEMBLA0A0Q3G3G30.0A0A0Q3G3G3_BRADI; Uncharacterized protein
STRINGBRADI2G22810.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95023340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-100bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Matos JL, et al.
    Irreversible fate commitment in the Arabidopsis stomatal lineage requires a FAMA and RETINOBLASTOMA-RELATED module.
    Elife, 2015.
    [PMID:25303364]
  3. Chen L, et al.
    NRPB3, the third largest subunit of RNA polymerase II, is essential for stomatal patterning and differentiation in Arabidopsis.
    Development, 2016. 143(9): p. 1600-11
    [PMID:26989174]
  4. Lee JH,Jung JH,Park CM
    Light Inhibits COP1-Mediated Degradation of ICE Transcription Factors to Induce Stomatal Development in Arabidopsis.
    Plant Cell, 2017. 29(11): p. 2817-2830
    [PMID:29070509]
  5. Han X, et al.
    Jasmonate Negatively Regulates Stomatal Development in Arabidopsis Cotyledons.
    Plant Physiol., 2018. 176(4): p. 2871-2885
    [PMID:29496884]
  6. Li X,Yang R,Chen H
    The Arabidopsis thaliana Mediator subunit MED8 regulates plant immunity to Botrytis Cinerea through interacting with the basic helix-loop-helix (bHLH) transcription factor FAMA.
    PLoS ONE, 2018. 13(3): p. e0193458
    [PMID:29513733]