PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast08G085900.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 295aa MW: 32710.9 Da PI: 5.265

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast08G085900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.7	1.5e-21	103	221	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............................tekerrtraetrtg 61 Yn+YA+ GFs++ ++s++s ++ + k++fvC+k k+++ +++ +k+r++++ ++t+ Brast08G085900.1.p 103 HYNAYARVKGFSIKSNTSRRSAYTNLVEKQQFVCNKFRKPKNMDDAggqsskvrrkesssdedpidatnedplaiknVVKRRKRESIKQTE 193 6**************************************999999*************************88899999999 PP FAR1 62 CkaklkvkkekdgkwevtkleleHnHela 90 Ckak++vk++ dg+w+v+ ++ eHnHel Brast08G085900.1.p 194 CKAKMTVKLM-DGRWQVIFFVAEHNHELI 221 ******.**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-19	103	221	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MLDLNEIPLD QGLEAPLDSG HIGDAEPASY TPIAPIDVQE GVGDGVAQET DGVAQNTDGA 60 AENTSGVGCE VPANIEQDLE YSSQPQEPFL GMRFDTLVGA KEHYNAYARV KGFSIKSNTS 120 RRSAYTNLVE KQQFVCNKFR KPKNMDDAGG QSSKVRRKES SSDEDPIDAT NEDPLAIKNV 180 VKRRKRESIK QTECKAKMTV KLMDGRWQVI FFVAEHNHEL ITRPSLTKYL LSHKNISPEE 240 EGFIRLLDDC NLETGQIMTL LSRFYANGLI VPYTTKTIRN FCKVANGILL SCYL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast08G085900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233530.1	1e-130	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0Q3E4T2	1e-131	A0A0Q3E4T2_BRADI; Uncharacterized protein
STRING	BRADI4G21230.1	4e-76	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9528	8	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-15	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Brast08G085900.1.p