PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G082800.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 275aa MW: 31400.1 Da PI: 9.9301 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.3 | 3.3e-19 | 137 | 224 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k++++s+v++ +l lp++f+++h ++++++++lede+g +++ + +++ + l++GW++F ++L++gD++vF+l++ ++f Brast08G082800.3.p 137 FVKTMVRSHVSSCFWLGLPNRFCKDHL--PPREFKMVLEDEEGVEFDTVY--IGNRTG--LSGGWRGFSMHHNLEDGDSLVFELVEPDRF- 220 89*********************9995..34779****************..555444..***********************9987777. PP .EEEE CS B3 92 lvvkv 96 ++ + Brast08G082800.3.p 221 -KIYI 224 .5555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-21 | 129 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.04E-24 | 130 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.50E-28 | 135 | 226 | No hit | No description |
Pfam | PF02362 | 5.3E-18 | 137 | 225 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.506 | 137 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.6E-23 | 137 | 228 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MATEASSAAA GTAYEEERRK RILENLKHLE DLGIAKMSKS LIQAARLQDK SKRASPKSRK 60 KFEATTEVRR SSRTRTSVSY KDDFPEVDHF VRRRRASTSA ENGRGYTGRI SSYQQQQRAF 120 KRAEKLQDSL DPDNPSFVKT MVRSHVSSCF WLGLPNRFCK DHLPPREFKM VLEDEEGVEF 180 DTVYIGNRTG LSGGWRGFSM HHNLEDGDSL VFELVEPDRF KIYIIKAIDD DANEAKSSRD 240 STEEEHDRKD SPVSEAPSSP EPLKGAKRRK LRRR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 262 | 268 | LKGAKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G082800.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094979 | 0.0 | FP094979.1 Phyllostachys edulis cDNA clone: bphyst037c23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003568233.1 | 0.0 | B3 domain-containing protein Os05g0481400 | ||||
Swissprot | Q5KQI4 | 1e-135 | Y5814_ORYSJ; B3 domain-containing protein Os05g0481400 | ||||
TrEMBL | A0A2K2D9S9 | 0.0 | A0A2K2D9S9_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G22130.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 3e-39 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast08G082800.3.p |
Publications ? help Back to Top | |||
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