PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast08G082800.2.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Protein Properties

Length: 315aa MW: 35739.3 Da PI: 9.1188

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast08G082800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.9	4.3e-19	177	264	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k++++s+v++ +l lp++f+++h ++++++++lede+g +++ + +++ + l++GW++F ++L++gD++vF+l++ ++f Brast08G082800.2.p 177 FVKTMVRSHVSSCFWLGLPNRFCKDHL--PPREFKMVLEDEEGVEFDTVY--IGNRTG--LSGGWRGFSMHHNLEDGDSLVFELVEPDRF- 260 89*******************9995..34779************..555444..*********************9987777. PP .EEEE CS B3 92 lvvkv 96 ++ + Brast08G082800.2.p 261 -KIYI 264 .5555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.2E-21	169	266	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.39E-24	170	266	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.42E-28	175	266	No hit	No description
SMART	SM01019	4.6E-23	177	268	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.9E-18	177	265	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.506	177	268	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MATEASSAAA GTAYEEERRK RILENLKHLE DLGIAKMSKS LIQAARLQDK SKRASPKSRK 60 KFEATTEVRR SSRTRTSVSY KDDVFLPFLR YGASALGFVI SGRPFGAALL CCDVLIMEDV 120 CYEFPEVDHF VRRRRASTSA ENGRGYTGRI SSYQQQQRAF KRAEKLQDSL DPDNPSFVKT 180 MVRSHVSSCF WLGLPNRFCK DHLPPREFKM VLEDEEGVEF DTVYIGNRTG LSGGWRGFSM 240 HHNLEDGDSL VFELVEPDRF KIYIIKAIDD DANEAKSSRD STEEEHDRKD SPVSEAPSSP 300 EPLKGAKRRK LRRR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	302	308	LKGAKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast08G082800.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP094979	1e-152	FP094979.1 Phyllostachys edulis cDNA clone: bphyst037c23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003568233.1	0.0	B3 domain-containing protein Os05g0481400
Swissprot	Q5KQI4	1e-125	Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBL	A0A2K2D9S9	1e-176	A0A2K2D9S9_BRADI; Uncharacterized protein
STRING	BRADI2G22130.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	3e-38	B3 family protein

Link Out ? help Back to Top
Phytozome	Brast08G082800.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]