PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast08G082800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 315aa MW: 35739.3 Da PI: 9.1188 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.9 | 4.3e-19 | 177 | 264 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k++++s+v++ +l lp++f+++h ++++++++lede+g +++ + +++ + l++GW++F ++L++gD++vF+l++ ++f Brast08G082800.1.p 177 FVKTMVRSHVSSCFWLGLPNRFCKDHL--PPREFKMVLEDEEGVEFDTVY--IGNRTG--LSGGWRGFSMHHNLEDGDSLVFELVEPDRF- 260 89*********************9995..34779****************..555444..***********************9987777. PP .EEEE CS B3 92 lvvkv 96 ++ + Brast08G082800.1.p 261 -KIYI 264 .5555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-21 | 169 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.39E-24 | 170 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.42E-28 | 175 | 266 | No hit | No description |
SMART | SM01019 | 4.6E-23 | 177 | 268 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.9E-18 | 177 | 265 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.506 | 177 | 268 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MATEASSAAA GTAYEEERRK RILENLKHLE DLGIAKMSKS LIQAARLQDK SKRASPKSRK 60 KFEATTEVRR SSRTRTSVSY KDDVFLPFLR YGASALGFVI SGRPFGAALL CCDVLIMEDV 120 CYEFPEVDHF VRRRRASTSA ENGRGYTGRI SSYQQQQRAF KRAEKLQDSL DPDNPSFVKT 180 MVRSHVSSCF WLGLPNRFCK DHLPPREFKM VLEDEEGVEF DTVYIGNRTG LSGGWRGFSM 240 HHNLEDGDSL VFELVEPDRF KIYIIKAIDD DANEAKSSRD STEEEHDRKD SPVSEAPSSP 300 EPLKGAKRRK LRRR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 302 | 308 | LKGAKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast08G082800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094979 | 1e-152 | FP094979.1 Phyllostachys edulis cDNA clone: bphyst037c23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003568233.1 | 0.0 | B3 domain-containing protein Os05g0481400 | ||||
Swissprot | Q5KQI4 | 1e-125 | Y5814_ORYSJ; B3 domain-containing protein Os05g0481400 | ||||
TrEMBL | A0A2K2D9S9 | 1e-176 | A0A2K2D9S9_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G22130.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11370 | 33 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 3e-38 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast08G082800.1.p |
Publications ? help Back to Top | |||
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