PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G080400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 408aa    MW: 45874.4 Da    PI: 7.3549
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G080400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.29e-344397155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        kprl+WtpeLH+rFv+av+qLGG+ekAtPkt+++lm+++gLtl+h+kSHLQkYRl
  Brast08G080400.1.p 43 KPRLKWTPELHQRFVDAVNQLGGAEKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 97
                        79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.38740100IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-324198IPR009057Homeodomain-like
SuperFamilySSF466898.42E-174298IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-234398IPR006447Myb domain, plants
PfamPF002497.6E-104596IPR001005SANT/Myb domain
PfamPF143792.8E-22144190IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MYHQHQGPSE LFSTRTTFPM ERHMFLHGGS TQDSGLVLST DAKPRLKWTP ELHQRFVDAV  60
NQLGGAEKAT PKTVMRLMGI PGLTLYHLKS HLQKYRLSKN LQAQVNVGTT KNAIGCAVVA  120
DSMPGTSAPA ITNTNVIPQT EKTIQIGEAL QMQIEVQRQL NEQLEVQRHL QLRIEAQGKY  180
LQAVLEQAQE SLGKQNMGPA NLEDAKIKIS ELVSQVSNEC FSNGVTDIRE SSSIHRLEPR  240
QIQFVESSTN NCLTAAEGYI NEHRLHSHGV LKAYDDSSVL YRKQSHGHEY QFPLNRSLSE  300
RRMGHLHNVK EYHKAELGSE SDREIQQEYI TPQKNVRGST TSSASGSKEG DTDKLYLEEP  360
SCKRQAIIDY PIFERPKSGK KLDLNTHNTD DTDQGFRHFD LNGFSWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-204299158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-204299158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-204399157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-204399157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-204399157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-204399157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-204299158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-204299158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-204299158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-204299158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-204299158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-204299158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G080400.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315320.10.0myb-related protein 2-like
RefseqXP_024315321.10.0myb-related protein 2-like
TrEMBLI1HI960.0I1HI96_BRADI; Uncharacterized protein
STRINGBRADI2G21880.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122793137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18240.49e-95myb-related protein 1